Wall clock time and date at job start Mon Mar 30 2020 03:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47230 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99936 * 180.02562 * 11 10 9 13 13 H 1.08994 * 110.01679 * 326.39233 * 12 11 10 14 14 C 1.54271 * 110.03418 * 87.83424 * 12 11 10 15 15 C 1.54886 * 104.19586 * 142.89418 * 14 12 11 16 16 C 1.54886 * 102.75060 * 322.05719 * 15 14 12 17 17 C 1.53872 * 110.03262 * 205.00010 * 12 11 10 18 18 H 1.08998 * 110.03590 * 121.43115 * 17 12 11 19 19 C 1.52997 * 110.03098 * 0.04578 * 17 12 11 20 20 C 1.53004 * 117.49523 * 128.75019 * 19 17 12 21 21 C 1.52998 * 117.49831 * 60.09065 * 19 17 12 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 25 25 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 26 26 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 27 27 H 1.00899 * 111.00119 * 303.94851 * 11 10 9 28 28 H 1.09004 * 110.48125 * 261.57450 * 14 12 11 29 29 H 1.08998 * 110.48765 * 24.20996 * 14 12 11 30 30 H 1.09002 * 110.75081 * 203.74020 * 15 14 12 31 31 H 1.08995 * 110.75497 * 80.37646 * 15 14 12 32 32 H 1.09008 * 110.48408 * 279.26728 * 16 15 14 33 33 H 1.08995 * 110.48746 * 156.62591 * 16 15 14 34 34 H 1.08993 * 115.55270 * 274.41348 * 19 17 12 35 35 H 1.08995 * 117.50041 * 359.97438 * 20 19 17 36 36 H 1.09000 * 117.49595 * 145.02248 * 20 19 17 37 37 H 1.09004 * 117.49947 * 214.97649 * 21 19 17 38 38 H 1.08996 * 117.49693 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 7 1.5107 -4.9343 0.0077 12 6 2.4351 -6.0759 0.0061 13 1 3.3306 -5.8301 -0.5647 14 6 2.8159 -6.4497 1.4536 15 6 2.9007 -7.9962 1.4367 16 6 1.7325 -8.3924 0.5001 17 6 1.7463 -7.3111 -0.6001 18 1 2.3078 -7.6653 -1.4646 19 6 0.3146 -6.9631 -1.0124 20 6 -0.1168 -7.3193 -2.4365 21 6 0.1281 -5.8576 -2.0535 22 1 -0.4850 0.8401 0.0004 23 1 0.6281 -2.5552 0.8979 24 1 0.6206 -2.5586 -0.8820 25 1 2.8678 -3.6059 -0.8902 26 1 2.8760 -3.6028 0.8897 27 1 0.8777 -4.9832 0.7919 28 1 3.7811 -6.0175 1.7178 29 1 2.0450 -6.1174 2.1488 30 1 2.7488 -8.4022 2.4368 31 1 3.8546 -8.3263 1.0255 32 1 0.7864 -8.3738 1.0414 33 1 1.9069 -9.3780 0.0687 34 1 -0.4343 -7.0441 -0.2246 35 1 0.6195 -7.8011 -3.0797 36 1 -1.1496 -7.6342 -2.5856 37 1 -0.7437 -5.2114 -1.9508 38 1 1.0254 -5.3780 -2.4444 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308510910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:23 Heat of formation + Delta-G solvation = 3.661627 kcal Electronic energy + Delta-G solvation = -15604.137113 eV Core-core repulsion = 13253.182738 eV Total energy + Delta-G solvation = -2350.954375 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.20522 -35.74798 -34.55732 -32.58516 -29.42610 -28.50667 -26.29238 -23.63477 -21.86519 -21.63389 -20.64260 -20.42818 -18.69619 -16.29502 -15.90464 -15.47336 -14.58365 -14.37869 -13.96789 -13.70363 -13.37916 -12.84096 -12.36949 -12.14563 -11.80473 -11.35029 -11.06000 -11.00460 -10.96985 -10.92009 -10.89829 -10.63863 -10.47983 -10.24333 -9.96960 -9.66304 -9.39977 -9.22064 -9.08259 -8.32774 -7.53842 -5.97558 -3.99555 3.32227 3.39647 3.43691 4.30733 4.45752 4.68331 4.71743 4.86290 5.18529 5.25254 5.38559 5.44731 5.50694 5.62750 5.66218 5.71144 5.81653 5.88567 5.92876 6.00391 6.03587 6.12071 6.23772 6.40670 6.43392 6.44950 6.52644 6.60299 6.64494 6.83523 7.05365 7.60660 7.80424 7.89733 8.06258 8.15204 8.48244 9.08373 9.64126 11.13864 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.006098 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.855932 B = 4590.589742 C = 5142.390382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.065 3.935 11 N -0.671 5.671 12 C 0.088 3.912 13 H 0.072 0.928 14 C -0.153 4.153 15 C -0.123 4.123 16 C -0.117 4.117 17 C -0.053 4.053 18 H 0.066 0.934 19 C -0.121 4.121 20 C -0.211 4.211 21 C -0.119 4.119 22 H 0.259 0.741 23 H 0.011 0.989 24 H 0.025 0.975 25 H 0.054 0.946 26 H 0.011 0.989 27 H 0.335 0.665 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -15.850 0.102 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.300 5.300 12 C -0.024 4.024 13 H 0.090 0.910 14 C -0.192 4.192 15 C -0.161 4.161 16 C -0.155 4.155 17 C -0.073 4.073 18 H 0.085 0.915 19 C -0.140 4.140 20 C -0.248 4.248 21 C -0.156 4.156 22 H 0.069 0.931 23 H 0.030 0.970 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.153 0.847 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.617 -15.708 -0.596 15.936 hybrid contribution 0.799 1.028 0.994 1.638 sum 3.417 -14.681 0.399 15.078 Atomic orbital electron populations 1.69985 1.06005 1.26386 1.50921 1.24999 0.94819 0.99159 0.95394 0.86559 0.80090 0.83923 0.77557 1.19819 1.20999 1.21072 1.21238 0.92978 0.91140 1.50495 0.92846 1.19045 0.94014 0.90435 0.97568 1.22160 0.96895 0.88976 0.98260 1.60844 1.18814 1.01362 1.48992 1.22181 0.94804 0.91547 0.93826 0.90986 1.23142 1.01569 0.95856 0.98622 1.22425 0.98537 0.95898 0.99239 1.22432 0.98495 0.98024 0.96536 1.21397 0.94634 0.94069 0.97163 0.91532 1.21844 0.95947 1.04746 0.91448 1.23167 1.01043 1.01693 0.98928 1.22566 1.02843 0.89345 1.00882 0.93111 0.97027 0.95649 0.92721 0.97039 0.84702 0.92074 0.91539 0.92076 0.91850 0.91603 0.92180 0.89009 0.89994 0.90027 0.89455 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.70 5.23 -27.88 -0.15 0.55 16 10 C 0.07 1.36 5.45 -3.83 -0.02 1.34 16 11 N -0.67 -11.47 3.07 -105.54 -0.32 -11.80 16 12 C 0.09 1.26 3.14 -66.59 -0.21 1.05 16 13 H 0.07 1.09 7.81 -51.93 -0.41 0.68 16 14 C -0.15 -1.97 6.45 -25.07 -0.16 -2.13 16 15 C -0.12 -1.32 6.91 -24.74 -0.17 -1.49 16 16 C -0.12 -1.28 6.36 -25.07 -0.16 -1.44 16 17 C -0.05 -0.68 3.10 -89.50 -0.28 -0.96 16 18 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 19 C -0.12 -1.64 4.42 -90.62 -0.40 -2.04 16 20 C -0.21 -2.71 10.19 -26.69 -0.27 -2.99 16 21 C -0.12 -1.82 8.37 -26.69 -0.22 -2.04 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 1.16 8.07 -51.93 -0.42 0.74 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.33 5.76 8.07 -39.29 -0.32 5.44 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.90 7.56 -51.93 -0.39 0.50 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.72 7.63 -51.92 -0.40 0.33 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.25 7.80 -51.93 -0.41 0.84 16 35 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.09 1.57 7.95 -51.93 -0.41 1.16 16 LS Contribution 301.60 15.07 4.55 4.55 Total: -1.00 -28.89 301.60 -9.44 -38.33 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.92 Total: 2.20 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.45 Total: -23.74 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.41 Total: -38.15 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.89 -9.44 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308510910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.990 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds