Wall clock time and date at job start Mon Mar 30 2020 03:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47230 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99936 * 180.02562 * 11 10 9 13 13 H 1.08994 * 110.01679 * 326.39233 * 12 11 10 14 14 C 1.54271 * 110.03418 * 87.83424 * 12 11 10 15 15 C 1.54886 * 104.19586 * 142.89418 * 14 12 11 16 16 C 1.54886 * 102.75060 * 322.05719 * 15 14 12 17 17 C 1.53872 * 110.03262 * 205.00010 * 12 11 10 18 18 H 1.08998 * 110.03590 * 121.43115 * 17 12 11 19 19 C 1.52997 * 110.03098 * 0.04578 * 17 12 11 20 20 C 1.53004 * 117.49523 * 128.75019 * 19 17 12 21 21 C 1.52998 * 117.49831 * 60.09065 * 19 17 12 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 25 25 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 26 26 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 27 27 H 1.00899 * 111.00119 * 303.94851 * 11 10 9 28 28 H 1.09004 * 110.48125 * 261.57450 * 14 12 11 29 29 H 1.08998 * 110.48765 * 24.20996 * 14 12 11 30 30 H 1.09002 * 110.75081 * 203.74020 * 15 14 12 31 31 H 1.08995 * 110.75497 * 80.37646 * 15 14 12 32 32 H 1.09008 * 110.48408 * 279.26728 * 16 15 14 33 33 H 1.08995 * 110.48746 * 156.62591 * 16 15 14 34 34 H 1.08993 * 115.55270 * 274.41348 * 19 17 12 35 35 H 1.08995 * 117.50041 * 359.97438 * 20 19 17 36 36 H 1.09000 * 117.49595 * 145.02248 * 20 19 17 37 37 H 1.09004 * 117.49947 * 214.97649 * 21 19 17 38 38 H 1.08996 * 117.49693 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 7 1.5107 -4.9343 0.0077 12 6 2.4351 -6.0759 0.0061 13 1 3.3306 -5.8301 -0.5647 14 6 2.8159 -6.4497 1.4536 15 6 2.9007 -7.9962 1.4367 16 6 1.7325 -8.3924 0.5001 17 6 1.7463 -7.3111 -0.6001 18 1 2.3078 -7.6653 -1.4646 19 6 0.3146 -6.9631 -1.0124 20 6 -0.1168 -7.3193 -2.4365 21 6 0.1281 -5.8576 -2.0535 22 1 -0.4850 0.8401 0.0004 23 1 0.6281 -2.5552 0.8979 24 1 0.6206 -2.5586 -0.8820 25 1 2.8678 -3.6059 -0.8902 26 1 2.8760 -3.6028 0.8897 27 1 0.8777 -4.9832 0.7919 28 1 3.7811 -6.0175 1.7178 29 1 2.0450 -6.1174 2.1488 30 1 2.7488 -8.4022 2.4368 31 1 3.8546 -8.3263 1.0255 32 1 0.7864 -8.3738 1.0414 33 1 1.9069 -9.3780 0.0687 34 1 -0.4343 -7.0441 -0.2246 35 1 0.6195 -7.8011 -3.0797 36 1 -1.1496 -7.6342 -2.5856 37 1 -0.7437 -5.2114 -1.9508 38 1 1.0254 -5.3780 -2.4444 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308510910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:23 Heat of formation + Delta-G solvation = -11.265777 kcal Electronic energy + Delta-G solvation = -15604.784414 eV Core-core repulsion = 13253.182738 eV Total energy + Delta-G solvation = -2351.601676 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33103 -36.98902 -36.13006 -34.53769 -31.22217 -29.51934 -27.77958 -25.49076 -23.05443 -22.80653 -22.26579 -21.55214 -19.86238 -18.46379 -17.10720 -16.61976 -16.44574 -15.90845 -15.26988 -14.82216 -14.74822 -14.40573 -14.09967 -13.47559 -13.15638 -13.02526 -12.79594 -12.63486 -12.29829 -12.14002 -12.01115 -11.96551 -11.80841 -11.54578 -11.36330 -11.32410 -11.16977 -10.76671 -10.56567 -10.41800 -8.96423 -8.20359 -6.31430 1.39136 1.39672 1.52884 2.40123 3.13046 3.18804 3.41252 3.70074 3.84824 4.04674 4.22510 4.35017 4.39741 4.50312 4.60444 4.63179 4.69961 4.78114 4.81149 4.86808 4.95706 4.97924 5.06771 5.11868 5.20919 5.29126 5.34683 5.37957 5.47683 5.48895 5.52737 5.65405 5.72915 5.82637 6.19657 6.41854 6.65596 6.86930 7.37787 8.91857 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.006098 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.855932 B = 4590.589742 C = 5142.390382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.036 3.964 10 C 0.087 3.913 11 N -0.669 5.669 12 C 0.084 3.916 13 H 0.064 0.936 14 C -0.152 4.152 15 C -0.115 4.115 16 C -0.111 4.111 17 C -0.050 4.050 18 H 0.073 0.927 19 C -0.117 4.117 20 C -0.188 4.188 21 C -0.143 4.143 22 H 0.263 0.737 23 H -0.012 1.012 24 H -0.005 1.005 25 H 0.050 0.950 26 H 0.011 0.989 27 H 0.334 0.666 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -17.133 0.342 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.042 4.042 11 N -0.298 5.298 12 C -0.026 4.026 13 H 0.083 0.917 14 C -0.191 4.191 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.069 4.069 18 H 0.091 0.909 19 C -0.136 4.136 20 C -0.225 4.225 21 C -0.181 4.181 22 H 0.072 0.928 23 H 0.006 0.994 24 H 0.013 0.987 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.152 0.848 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.767 -17.016 -0.356 17.432 hybrid contribution 0.406 1.409 0.901 1.720 sum 4.173 -15.608 0.545 16.165 Atomic orbital electron populations 1.70117 1.07784 1.27657 1.51609 1.25959 0.95749 1.03293 0.94689 0.85395 0.79006 0.78778 0.77832 1.18693 1.20328 1.20273 1.21661 0.93413 0.92474 1.50648 0.92471 1.18870 0.94214 0.92192 0.94848 1.21734 0.95414 0.89110 0.97946 1.60780 1.19143 1.00791 1.49095 1.22289 0.94139 0.91020 0.95190 0.91727 1.23088 1.01053 0.97947 0.97021 1.22403 0.99041 0.93683 1.00142 1.22405 0.98644 0.98069 0.95746 1.21386 0.93703 0.93714 0.98052 0.90887 1.21904 0.96675 1.03219 0.91768 1.23206 1.02131 0.98854 0.98267 1.22368 1.01367 0.90593 1.03767 0.92791 0.99385 0.98688 0.93130 0.97061 0.84766 0.92382 0.92274 0.90688 0.90771 0.91540 0.90264 0.89000 0.88693 0.88793 0.91498 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -31.65 9.11 25.60 0.23 -31.41 16 8 H 0.06 3.21 7.74 -2.92 -0.02 3.19 16 9 C 0.04 1.96 5.23 29.85 0.16 2.12 16 10 C 0.09 3.72 5.45 86.30 0.47 4.19 16 11 N -0.67 -23.34 3.07 -487.83 -1.50 -24.83 16 12 C 0.08 2.35 3.14 45.64 0.14 2.49 16 13 H 0.06 1.91 7.81 -2.39 -0.02 1.89 16 14 C -0.15 -3.70 6.45 31.67 0.20 -3.50 16 15 C -0.11 -2.13 6.91 31.88 0.22 -1.91 16 16 C -0.11 -2.08 6.36 31.67 0.20 -1.88 16 17 C -0.05 -1.16 3.10 -10.07 -0.03 -1.20 16 18 H 0.07 1.66 7.93 -2.39 -0.02 1.64 16 19 C -0.12 -3.04 4.42 -10.79 -0.05 -3.09 16 20 C -0.19 -4.52 10.19 30.62 0.31 -4.21 16 21 C -0.14 -4.47 8.37 30.62 0.26 -4.22 16 22 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 23 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 24 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 25 H 0.05 2.19 8.07 -2.39 -0.02 2.17 16 26 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.33 11.77 8.07 -89.69 -0.72 11.04 16 28 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.06 1.53 7.56 -2.39 -0.02 1.52 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.26 7.63 -2.38 -0.02 1.25 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 2.40 7.80 -2.39 -0.02 2.38 16 35 H 0.09 2.07 8.06 -2.39 -0.02 2.05 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 38 H 0.07 2.57 7.95 -2.39 -0.02 2.55 16 Total: -1.00 -62.75 301.60 3.67 -59.07 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.28 Total: 18.26 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 2.58 Total: -42.10 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.21 Total: -82.22 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -62.75 3.67 -59.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308510910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.806 kcal (2) G-P(sol) polarization free energy of solvation -62.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds