Wall clock time and date at job start Mon Mar 30 2020 03:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 179.97438 * 11 10 9 13 13 H 1.08999 * 110.01752 * 34.93354 * 12 11 10 14 14 C 1.54267 * 110.03103 * 273.54458 * 12 11 10 15 15 C 1.54894 * 104.19575 * 217.10760 * 14 12 11 16 16 C 1.54886 * 102.74755 * 37.94195 * 15 14 12 17 17 C 1.53873 * 110.02907 * 156.37894 * 12 11 10 18 18 H 1.09003 * 110.02721 * 238.56438 * 17 12 11 19 19 C 1.52993 * 110.03746 * 359.97438 * 17 12 11 20 20 C 1.52999 * 117.49875 * 248.74995 * 19 17 12 21 21 C 1.53001 * 117.50244 * 180.09052 * 19 17 12 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 26 26 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 27 27 H 1.00898 * 110.99877 * 303.95043 * 11 10 9 28 28 H 1.09005 * 110.48846 * 335.78085 * 14 12 11 29 29 H 1.09000 * 110.48955 * 98.42705 * 14 12 11 30 30 H 1.08999 * 110.75698 * 156.26041 * 15 14 12 31 31 H 1.08996 * 110.75499 * 279.44414 * 15 14 12 32 32 H 1.08996 * 110.48980 * 80.73673 * 16 15 14 33 33 H 1.09001 * 110.48405 * 203.38540 * 16 15 14 34 34 H 1.09002 * 115.54945 * 34.41518 * 19 17 12 35 35 H 1.09003 * 117.50132 * 359.97438 * 20 19 17 36 36 H 1.09000 * 117.50175 * 145.01972 * 20 19 17 37 37 H 1.08994 * 117.49780 * 214.97959 * 21 19 17 38 38 H 1.09005 * 117.49612 * 359.97037 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 1 3.3227 -5.8377 0.5847 14 6 2.8375 -6.4294 -1.4486 15 6 2.9222 -7.9760 -1.4522 16 6 1.7404 -8.3851 -0.5385 17 6 1.7378 -7.3193 0.5769 18 1 2.2867 -7.6855 1.4445 19 6 0.2999 -6.9773 0.9723 20 6 -0.0384 -6.9645 2.4643 21 6 -0.5532 -8.0968 1.5722 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8720 -3.6043 -0.8905 26 1 2.8720 -3.6043 0.8894 27 1 0.8742 -4.9846 0.7800 28 1 2.0768 -6.0874 -2.1504 29 1 3.8064 -5.9937 -1.6926 30 1 2.7852 -8.3681 -2.4599 31 1 3.8713 -8.3118 -1.0344 32 1 0.8025 -8.3590 -1.0932 33 1 1.9086 -9.3767 -0.1182 34 1 -0.2017 -6.2480 0.3362 35 1 0.7633 -7.2002 3.1643 36 1 -0.7629 -6.2271 2.8099 37 1 -1.6161 -8.1038 1.3310 38 1 -0.0902 -9.0772 1.6847 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308510911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:26 Heat of formation + Delta-G solvation = 6.326137 kcal Electronic energy + Delta-G solvation = -15453.436017 eV Core-core repulsion = 13102.597183 eV Total energy + Delta-G solvation = -2350.838833 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.34342 -36.00101 -34.58023 -32.60752 -29.52000 -28.47445 -26.33382 -23.66512 -22.47663 -21.96905 -20.50447 -20.22154 -18.61434 -16.30669 -16.10557 -15.53715 -14.73936 -14.45886 -14.23652 -13.87401 -13.38881 -12.96329 -12.42964 -12.19198 -11.52644 -11.42999 -11.27878 -11.17166 -10.97488 -10.88944 -10.70993 -10.56113 -10.48225 -10.45057 -9.98647 -9.87535 -9.73534 -9.27191 -9.08818 -8.32738 -7.71458 -5.97219 -3.99352 3.32705 3.39931 3.44234 3.86680 4.46127 4.63046 4.69202 4.81863 4.92920 5.11898 5.18323 5.29374 5.38813 5.54185 5.65933 5.69692 5.74318 5.75083 5.86499 5.97092 6.00850 6.07427 6.11604 6.19169 6.32403 6.34955 6.43480 6.48960 6.57163 6.65297 7.05708 7.59466 7.79301 7.89444 8.06351 8.14548 8.48151 9.08306 9.64301 11.14320 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035396 B = 0.005776 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.860177 B = 4846.675550 C = 5409.931613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.064 3.936 11 N -0.686 5.686 12 C 0.087 3.913 13 H 0.039 0.961 14 C -0.113 4.113 15 C -0.125 4.125 16 C -0.110 4.110 17 C -0.062 4.062 18 H 0.065 0.935 19 C -0.147 4.147 20 C -0.185 4.185 21 C -0.181 4.181 22 H 0.259 0.741 23 H 0.025 0.975 24 H 0.012 0.988 25 H 0.056 0.944 26 H 0.013 0.987 27 H 0.341 0.659 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.432 -16.761 1.163 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.064 4.064 11 N -0.321 5.321 12 C -0.024 4.024 13 H 0.057 0.943 14 C -0.151 4.151 15 C -0.163 4.163 16 C -0.148 4.148 17 C -0.081 4.081 18 H 0.083 0.917 19 C -0.165 4.165 20 C -0.222 4.222 21 C -0.218 4.218 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.030 0.970 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.163 0.837 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.146 0.854 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.198 -16.634 0.499 16.786 hybrid contribution 0.791 1.054 1.013 1.662 sum 2.990 -15.580 1.512 15.936 Atomic orbital electron populations 1.69985 1.06023 1.26413 1.50924 1.25004 0.94831 0.99189 0.95371 0.86544 0.80091 0.83847 0.77559 1.19789 1.20985 1.21053 1.21232 0.93009 0.91069 1.50507 0.92769 1.19066 0.94052 0.90532 0.97572 1.22185 0.96955 0.88888 0.98395 1.60999 1.19462 1.01677 1.49914 1.22084 0.93949 0.90675 0.95656 0.94349 1.22430 1.01211 0.94324 0.97181 1.22473 0.98031 0.96461 0.99368 1.22305 0.98942 0.97210 0.96329 1.21519 0.93545 0.95363 0.97654 0.91650 1.22477 0.96273 1.01804 0.95962 1.23044 1.03717 1.01888 0.93573 1.22889 0.99687 0.94035 1.05221 0.93093 0.95710 0.96951 0.92543 0.96915 0.83724 0.90255 0.92409 0.91817 0.92095 0.91113 0.92399 0.85413 0.89277 0.88677 0.89068 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.06 1.39 5.45 -3.82 -0.02 1.37 16 11 N -0.69 -12.51 5.39 -105.54 -0.57 -13.08 16 12 C 0.09 1.32 3.23 -66.59 -0.22 1.10 16 13 H 0.04 0.61 7.83 -51.93 -0.41 0.20 16 14 C -0.11 -1.59 6.43 -25.07 -0.16 -1.75 16 15 C -0.13 -1.41 6.91 -24.74 -0.17 -1.58 16 16 C -0.11 -1.23 6.12 -25.07 -0.15 -1.38 16 17 C -0.06 -0.78 3.08 -89.50 -0.28 -1.06 16 18 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 19 C -0.15 -1.88 3.43 -90.62 -0.31 -2.19 16 20 C -0.19 -2.20 10.19 -26.70 -0.27 -2.48 16 21 C -0.18 -1.98 9.99 -26.69 -0.27 -2.24 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 26 H 0.01 0.28 8.07 -51.93 -0.42 -0.14 16 27 H 0.34 6.10 5.90 -39.29 -0.23 5.87 16 28 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.13 1.90 6.48 -51.93 -0.34 1.56 16 35 H 0.09 1.01 8.07 -51.93 -0.42 0.59 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 301.80 15.07 4.55 4.55 Total: -1.00 -29.70 301.80 -9.53 -39.23 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.82 Total: 2.38 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -2.40 Total: -23.45 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.17 Total: -39.64 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.70 -9.53 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308510911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.556 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds