Wall clock time and date at job start Mon Mar 30 2020 03:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 179.97438 * 11 10 9 13 13 H 1.08999 * 110.01752 * 34.93354 * 12 11 10 14 14 C 1.54267 * 110.03103 * 273.54458 * 12 11 10 15 15 C 1.54894 * 104.19575 * 217.10760 * 14 12 11 16 16 C 1.54886 * 102.74755 * 37.94195 * 15 14 12 17 17 C 1.53873 * 110.02907 * 156.37894 * 12 11 10 18 18 H 1.09003 * 110.02721 * 238.56438 * 17 12 11 19 19 C 1.52993 * 110.03746 * 359.97438 * 17 12 11 20 20 C 1.52999 * 117.49875 * 248.74995 * 19 17 12 21 21 C 1.53001 * 117.50244 * 180.09052 * 19 17 12 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 26 26 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 27 27 H 1.00898 * 110.99877 * 303.95043 * 11 10 9 28 28 H 1.09005 * 110.48846 * 335.78085 * 14 12 11 29 29 H 1.09000 * 110.48955 * 98.42705 * 14 12 11 30 30 H 1.08999 * 110.75698 * 156.26041 * 15 14 12 31 31 H 1.08996 * 110.75499 * 279.44414 * 15 14 12 32 32 H 1.08996 * 110.48980 * 80.73673 * 16 15 14 33 33 H 1.09001 * 110.48405 * 203.38540 * 16 15 14 34 34 H 1.09002 * 115.54945 * 34.41518 * 19 17 12 35 35 H 1.09003 * 117.50132 * 359.97438 * 20 19 17 36 36 H 1.09000 * 117.50175 * 145.01972 * 20 19 17 37 37 H 1.08994 * 117.49780 * 214.97959 * 21 19 17 38 38 H 1.09005 * 117.49612 * 359.97037 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 1 3.3227 -5.8377 0.5847 14 6 2.8375 -6.4294 -1.4486 15 6 2.9222 -7.9760 -1.4522 16 6 1.7404 -8.3851 -0.5385 17 6 1.7378 -7.3193 0.5769 18 1 2.2867 -7.6855 1.4445 19 6 0.2999 -6.9773 0.9723 20 6 -0.0384 -6.9645 2.4643 21 6 -0.5532 -8.0968 1.5722 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8720 -3.6043 -0.8905 26 1 2.8720 -3.6043 0.8894 27 1 0.8742 -4.9846 0.7800 28 1 2.0768 -6.0874 -2.1504 29 1 3.8064 -5.9937 -1.6926 30 1 2.7852 -8.3681 -2.4599 31 1 3.8713 -8.3118 -1.0344 32 1 0.8025 -8.3590 -1.0932 33 1 1.9086 -9.3767 -0.1182 34 1 -0.2017 -6.2480 0.3362 35 1 0.7633 -7.2002 3.1643 36 1 -0.7629 -6.2271 2.8099 37 1 -1.6161 -8.1038 1.3310 38 1 -0.0902 -9.0772 1.6847 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308510911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:25 Heat of formation + Delta-G solvation = -10.176209 kcal Electronic energy + Delta-G solvation = -15454.151612 eV Core-core repulsion = 13102.597183 eV Total energy + Delta-G solvation = -2351.554429 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44040 -37.14461 -36.17376 -34.59114 -31.33131 -29.51477 -27.84910 -25.55254 -23.47229 -23.02600 -22.26926 -21.29043 -19.76993 -18.46362 -17.30447 -16.74615 -16.45487 -16.08439 -15.39337 -14.89101 -14.79741 -14.57419 -14.21477 -13.51176 -13.26677 -12.91152 -12.72039 -12.42693 -12.30682 -12.19612 -12.12692 -11.97016 -11.82865 -11.51968 -11.39836 -11.36389 -11.19398 -10.94586 -10.65301 -10.58290 -9.22952 -8.21718 -6.33439 1.39056 1.39828 1.53262 2.39537 2.91579 3.11513 3.39969 3.66392 3.77563 3.83268 4.14283 4.23621 4.31311 4.47763 4.53954 4.60178 4.60549 4.70854 4.78719 4.82011 4.91113 4.94372 5.06202 5.07946 5.13561 5.19004 5.27646 5.30469 5.36342 5.43448 5.48523 5.60358 5.66866 5.78987 6.16180 6.35452 6.61529 6.83893 7.35951 8.90767 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035396 B = 0.005776 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.860177 B = 4846.675550 C = 5409.931613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.034 3.966 10 C 0.083 3.917 11 N -0.689 5.689 12 C 0.080 3.920 13 H 0.034 0.966 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.105 4.105 17 C -0.055 4.055 18 H 0.077 0.923 19 C -0.163 4.163 20 C -0.191 4.191 21 C -0.160 4.160 22 H 0.264 0.736 23 H -0.006 1.006 24 H -0.011 1.011 25 H 0.053 0.947 26 H 0.012 0.988 27 H 0.342 0.658 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -17.938 1.444 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.046 4.046 11 N -0.323 5.323 12 C -0.029 4.029 13 H 0.052 0.948 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.143 4.143 17 C -0.074 4.074 18 H 0.095 0.905 19 C -0.182 4.182 20 C -0.228 4.228 21 C -0.197 4.197 22 H 0.073 0.927 23 H 0.012 0.988 24 H 0.007 0.993 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.164 0.836 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.386 -17.834 0.778 18.169 hybrid contribution 0.373 1.405 0.923 1.722 sum 3.759 -16.429 1.701 16.939 Atomic orbital electron populations 1.70117 1.07842 1.27772 1.51472 1.25989 0.95785 1.03407 0.94549 0.85352 0.78973 0.78526 0.77893 1.18642 1.20226 1.20183 1.21637 0.93460 0.92308 1.50894 0.92330 1.18905 0.94258 0.92367 0.94862 1.21797 0.95577 0.89064 0.98155 1.60961 1.19894 1.01274 1.50163 1.22254 0.93376 0.90555 0.96754 0.94839 1.22425 1.00315 0.96916 0.95767 1.22449 0.98846 0.93743 1.00390 1.22299 0.98628 0.97743 0.95618 1.21484 0.93033 0.94377 0.98502 0.90460 1.22331 0.96775 1.02867 0.96199 1.23096 1.04008 1.02535 0.93177 1.22956 0.99748 0.94083 1.02909 0.92702 0.98795 0.99264 0.92808 0.96960 0.83625 0.92250 0.92628 0.90540 0.90622 0.91692 0.89991 0.88072 0.88409 0.89456 0.88573 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.86 5.23 29.85 0.16 2.02 16 10 C 0.08 3.71 5.45 86.30 0.47 4.18 16 11 N -0.69 -25.80 5.39 -487.83 -2.63 -28.43 16 12 C 0.08 2.41 3.23 45.64 0.15 2.55 16 13 H 0.03 1.04 7.83 -2.39 -0.02 1.02 16 14 C -0.12 -3.18 6.43 31.67 0.20 -2.98 16 15 C -0.12 -2.33 6.91 31.89 0.22 -2.11 16 16 C -0.11 -2.07 6.12 31.67 0.19 -1.87 16 17 C -0.06 -1.31 3.08 -10.07 -0.03 -1.34 16 18 H 0.08 1.67 7.95 -2.39 -0.02 1.65 16 19 C -0.16 -4.07 3.43 -10.80 -0.04 -4.11 16 20 C -0.19 -4.37 10.19 30.62 0.31 -4.05 16 21 C -0.16 -3.17 9.99 30.62 0.31 -2.86 16 22 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 23 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 25 H 0.05 2.41 8.10 -2.39 -0.02 2.39 16 26 H 0.01 0.54 8.07 -2.39 -0.02 0.52 16 27 H 0.34 12.69 5.90 -89.70 -0.53 12.16 16 28 H 0.06 1.86 8.05 -2.38 -0.02 1.84 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.37 7.86 -2.39 -0.02 1.35 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 3.09 6.48 -2.39 -0.02 3.08 16 35 H 0.10 2.05 8.07 -2.39 -0.02 2.03 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -64.45 301.80 2.79 -61.66 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.47 Total: 19.29 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 2.64 Total: -41.93 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.35 Total: -86.15 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.45 2.79 -61.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308510911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.486 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds