Wall clock time and date at job start Mon Mar 30 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.35967 * 126.06783 * 125.00427 * 3 2 1 5 5 C 1.35706 * 107.54819 * 179.97438 * 4 3 2 6 6 N 1.40799 * 126.06596 * 180.02562 * 5 4 3 7 7 C 1.46503 * 120.00116 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47033 * 34.99848 * 7 6 5 9 9 C 1.53007 * 109.46777 * 275.00440 * 7 6 5 10 10 C 1.52998 * 109.47165 * 155.00341 * 7 6 5 11 11 C 1.50693 * 109.47220 * 295.00097 * 10 7 6 12 12 H 1.08005 * 120.00136 * 359.97438 * 11 10 7 13 13 C 1.37874 * 119.99932 * 180.02562 * 11 10 7 14 14 N 1.31511 * 120.00292 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 120.00008 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47113 * 59.99478 * 15 13 11 17 17 H 1.48495 * 109.47204 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46643 * 299.99693 * 15 13 11 19 19 C 1.40219 * 107.86766 * 0.02562 * 5 4 3 20 20 N 1.30864 * 108.36033 * 359.75155 * 19 5 4 21 21 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 23 23 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 24 24 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 25 25 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 26 26 H 1.07996 * 126.22517 * 359.94932 * 4 3 2 27 27 H 0.97001 * 120.00424 * 0.02562 * 6 5 4 28 28 H 1.08998 * 109.47303 * 299.99377 * 9 7 6 29 29 H 1.08999 * 109.46859 * 60.00019 * 9 7 6 30 30 H 1.09003 * 109.46556 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.46887 * 55.00276 * 10 7 6 32 32 H 1.09002 * 109.47177 * 174.99693 * 10 7 6 33 33 H 0.97001 * 120.00591 * 180.02562 * 14 13 11 34 34 H 1.07996 * 125.82031 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8796 1.9259 0.9002 5 6 3.0758 3.2213 0.5468 6 7 3.9000 4.1470 1.2148 7 6 4.0144 5.5196 0.7155 8 1 3.0567 5.8373 0.3033 9 6 5.0841 5.5774 -0.3770 10 6 4.4086 6.4492 1.8650 11 6 3.2988 6.4867 2.8838 12 1 2.4019 5.9060 2.7269 13 6 3.4281 7.2633 4.0156 14 7 4.5201 7.9709 4.2065 15 14 2.0521 7.3104 5.2783 16 1 1.8180 5.9425 5.8064 17 1 2.4348 8.2126 6.3940 18 1 0.8101 7.8132 4.6381 19 6 2.3120 3.4744 -0.6015 20 7 1.6848 2.3739 -0.9302 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 3.3259 1.4197 1.7434 27 1 4.3922 3.8760 2.0055 28 1 6.0419 5.2598 0.0352 29 1 4.8033 4.9151 -1.1958 30 1 5.1689 6.5985 -0.7487 31 1 5.3205 6.0801 2.3344 32 1 4.5803 7.4535 1.4775 33 1 4.6113 8.5170 5.0030 34 1 2.2548 4.4157 -1.1278 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308514265.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:52 Heat of formation + Delta-G solvation = 67.362585 kcal Electronic energy + Delta-G solvation = -15011.489515 eV Core-core repulsion = 12559.757077 eV Total energy + Delta-G solvation = -2451.732438 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.57295 -36.30494 -34.07279 -32.59548 -30.77719 -29.64141 -27.31844 -26.77066 -23.63860 -23.05833 -20.89529 -20.30766 -18.97939 -16.91632 -16.26216 -15.26037 -15.13838 -14.56004 -14.22735 -14.01159 -13.60272 -12.83938 -12.70845 -12.28234 -12.09815 -12.05377 -11.75039 -11.45908 -11.35397 -11.09027 -10.73450 -10.56705 -10.34491 -10.23441 -9.53066 -9.26080 -8.98168 -8.91502 -8.36205 -6.35732 -5.98810 -3.99854 2.30587 2.85312 3.34547 3.38790 3.42357 3.52080 4.40435 4.47916 4.75244 4.97957 5.14252 5.29874 5.37787 5.46042 5.57412 5.73954 5.93159 6.00446 6.06967 6.17298 6.20912 6.28771 6.54633 6.78006 6.89959 6.96447 7.45308 7.59278 7.66524 7.99526 8.10250 8.33423 8.44959 8.77813 9.06752 9.64079 11.12268 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.028456 B = 0.006809 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.749365 B = 4111.073552 C = 4822.669046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 N -0.379 5.379 4 C -0.061 4.061 5 C 0.092 3.908 6 N -0.721 5.721 7 C 0.162 3.838 8 H 0.058 0.942 9 C -0.164 4.164 10 C 0.016 3.984 11 C -0.510 4.510 12 H 0.057 0.943 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.006 3.994 20 N -0.284 5.284 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.163 0.837 27 H 0.397 0.603 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.028 0.972 33 H 0.260 0.740 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.225 -13.133 -7.275 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 N -0.170 5.170 4 C -0.207 4.207 5 C -0.018 4.018 6 N -0.355 5.355 7 C 0.056 3.944 8 H 0.076 0.924 9 C -0.223 4.223 10 C -0.021 4.021 11 C -0.549 4.549 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.183 4.183 20 N -0.107 5.107 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.180 0.820 27 H 0.231 0.769 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.992 -13.500 -8.057 16.221 hybrid contribution 0.049 0.404 1.775 1.821 sum -3.943 -13.096 -6.283 15.051 Atomic orbital electron populations 1.22073 0.94511 1.02191 1.03555 1.21416 0.95390 0.78145 1.02853 1.48052 1.37661 1.09375 1.21901 1.21526 1.04078 0.94607 1.00515 1.17903 0.98407 0.89877 0.95632 1.44088 1.50956 1.08680 1.31758 1.20959 0.96636 0.81818 0.94954 0.92355 1.22325 1.00278 1.00569 0.99098 1.19372 0.97026 0.93911 0.91830 1.21167 1.02825 1.26422 1.04467 0.92506 1.25000 0.95601 0.95645 0.98194 1.69945 1.26559 1.29379 1.27847 0.86688 0.82610 0.77796 0.81059 1.20416 1.21427 1.20347 1.23495 0.99185 0.97678 0.97924 1.77012 1.23066 0.96722 1.13901 0.91295 0.92112 0.91297 0.89271 0.90742 0.81984 0.76911 0.93193 0.93991 0.92707 0.96210 0.95389 0.93030 0.80706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.10 37.16 0.38 -1.23 16 2 C 0.14 1.50 7.24 -4.04 -0.03 1.47 16 3 N -0.38 -5.69 3.71 -61.00 -0.23 -5.92 16 4 C -0.06 -0.96 11.52 -16.63 -0.19 -1.15 16 5 C 0.09 1.64 6.94 -83.90 -0.58 1.05 16 6 N -0.72 -13.71 5.03 -52.32 -0.26 -13.97 16 7 C 0.16 3.25 2.53 -67.93 -0.17 3.08 16 8 H 0.06 1.20 7.16 -51.93 -0.37 0.83 16 9 C -0.16 -2.83 9.50 37.16 0.35 -2.47 16 10 C 0.02 0.39 4.52 -27.89 -0.13 0.27 16 11 C -0.51 -14.02 8.84 -34.45 -0.30 -14.33 16 12 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 15 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C 0.01 0.10 11.15 -17.22 -0.19 -0.09 16 20 N -0.28 -4.85 12.42 30.70 0.38 -4.47 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.09 0.72 8.07 -51.93 -0.42 0.31 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.40 7.56 8.73 -40.82 -0.36 7.20 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.18 2.80 7.45 -52.49 -0.39 2.41 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -30.82 291.91 -6.27 -37.08 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.31 Total: 3.82 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.97 Total: -11.91 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.63 Total: -50.14 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.82 -6.27 -37.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308514265.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.447 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds