Wall clock time and date at job start Mon Mar 30 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.35967 * 126.06783 * 125.00427 * 3 2 1 5 5 C 1.35706 * 107.54819 * 179.97438 * 4 3 2 6 6 N 1.40799 * 126.06596 * 180.02562 * 5 4 3 7 7 C 1.46503 * 120.00116 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47033 * 34.99848 * 7 6 5 9 9 C 1.53007 * 109.46777 * 275.00440 * 7 6 5 10 10 C 1.52998 * 109.47165 * 155.00341 * 7 6 5 11 11 C 1.50693 * 109.47220 * 295.00097 * 10 7 6 12 12 H 1.08005 * 120.00136 * 359.97438 * 11 10 7 13 13 C 1.37874 * 119.99932 * 180.02562 * 11 10 7 14 14 N 1.31511 * 120.00292 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 120.00008 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47113 * 59.99478 * 15 13 11 17 17 H 1.48495 * 109.47204 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46643 * 299.99693 * 15 13 11 19 19 C 1.40219 * 107.86766 * 0.02562 * 5 4 3 20 20 N 1.30864 * 108.36033 * 359.75155 * 19 5 4 21 21 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 23 23 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 24 24 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 25 25 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 26 26 H 1.07996 * 126.22517 * 359.94932 * 4 3 2 27 27 H 0.97001 * 120.00424 * 0.02562 * 6 5 4 28 28 H 1.08998 * 109.47303 * 299.99377 * 9 7 6 29 29 H 1.08999 * 109.46859 * 60.00019 * 9 7 6 30 30 H 1.09003 * 109.46556 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.46887 * 55.00276 * 10 7 6 32 32 H 1.09002 * 109.47177 * 174.99693 * 10 7 6 33 33 H 0.97001 * 120.00591 * 180.02562 * 14 13 11 34 34 H 1.07996 * 125.82031 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8796 1.9259 0.9002 5 6 3.0758 3.2213 0.5468 6 7 3.9000 4.1470 1.2148 7 6 4.0144 5.5196 0.7155 8 1 3.0567 5.8373 0.3033 9 6 5.0841 5.5774 -0.3770 10 6 4.4086 6.4492 1.8650 11 6 3.2988 6.4867 2.8838 12 1 2.4019 5.9060 2.7269 13 6 3.4281 7.2633 4.0156 14 7 4.5201 7.9709 4.2065 15 14 2.0521 7.3104 5.2783 16 1 1.8180 5.9425 5.8064 17 1 2.4348 8.2126 6.3940 18 1 0.8101 7.8132 4.6381 19 6 2.3120 3.4744 -0.6015 20 7 1.6848 2.3739 -0.9302 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 3.3259 1.4197 1.7434 27 1 4.3922 3.8760 2.0055 28 1 6.0419 5.2598 0.0352 29 1 4.8033 4.9151 -1.1958 30 1 5.1689 6.5985 -0.7487 31 1 5.3205 6.0801 2.3344 32 1 4.5803 7.4535 1.4775 33 1 4.6113 8.5170 5.0030 34 1 2.2548 4.4157 -1.1278 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308514265.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:52 Heat of formation + Delta-G solvation = 48.015204 kcal Electronic energy + Delta-G solvation = -15012.328480 eV Core-core repulsion = 12559.757077 eV Total energy + Delta-G solvation = -2452.571403 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.82072 -37.85867 -35.26474 -34.47987 -32.29058 -30.78681 -29.19210 -28.07232 -25.06774 -24.59208 -22.26040 -21.63822 -20.37732 -18.43924 -18.11845 -16.75623 -16.28907 -16.14630 -15.83182 -15.24850 -14.68737 -14.53198 -14.09950 -13.61063 -13.50282 -13.33659 -13.14407 -12.93880 -12.77845 -12.58080 -12.41013 -12.27747 -12.06664 -11.51403 -11.30797 -11.15280 -10.64922 -10.52746 -10.12843 -8.15485 -7.72822 -6.22622 1.06508 1.40268 1.41399 1.49602 1.77717 2.18703 2.43099 2.99830 3.20666 3.83181 4.14455 4.18875 4.26424 4.37635 4.47832 4.65032 4.69556 4.72419 4.87054 4.89858 5.03961 5.05533 5.22575 5.28149 5.35448 5.48217 5.57346 5.72548 5.87404 6.30998 6.33633 6.78021 6.91121 6.92827 7.31646 7.46018 8.95867 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.028456 B = 0.006809 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.749365 B = 4111.073552 C = 4822.669046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 N -0.373 5.373 4 C -0.046 4.046 5 C 0.060 3.940 6 N -0.727 5.727 7 C 0.174 3.826 8 H 0.051 0.949 9 C -0.153 4.153 10 C 0.023 3.977 11 C -0.518 4.518 12 H 0.052 0.948 13 C 0.004 3.996 14 N -0.932 5.932 15 Si 0.954 3.046 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.010 4.010 20 N -0.302 5.302 21 H 0.101 0.899 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.119 0.881 25 H 0.090 0.910 26 H 0.190 0.810 27 H 0.394 0.606 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.000 1.000 32 H 0.005 0.995 33 H 0.262 0.738 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.069 -15.071 -7.152 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 N -0.163 5.163 4 C -0.194 4.194 5 C -0.048 4.048 6 N -0.362 5.362 7 C 0.068 3.932 8 H 0.069 0.931 9 C -0.211 4.211 10 C -0.015 4.015 11 C -0.557 4.557 12 H 0.070 0.930 13 C -0.193 4.193 14 N -0.573 5.573 15 Si 0.780 3.220 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.197 4.197 20 N -0.126 5.126 21 H 0.119 0.881 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.137 0.863 25 H 0.109 0.891 26 H 0.207 0.793 27 H 0.228 0.772 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.019 0.981 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.865 -15.475 -7.964 18.071 hybrid contribution 0.283 0.890 1.722 1.959 sum -4.582 -14.585 -6.242 16.513 Atomic orbital electron populations 1.22032 0.94001 1.03815 1.01899 1.21908 0.95855 0.76014 1.05150 1.48552 1.36558 1.10457 1.20735 1.22002 1.02806 0.94048 1.00524 1.18099 0.99556 0.90673 0.96492 1.43877 1.51866 1.08296 1.32156 1.20635 0.96998 0.81798 0.93743 0.93118 1.22189 0.99125 1.01361 0.98473 1.19236 0.95540 0.93835 0.92865 1.21452 1.03166 1.25925 1.05132 0.93007 1.25797 0.97857 0.95415 1.00279 1.70062 1.28393 1.30238 1.28564 0.85673 0.79691 0.78028 0.78628 1.19690 1.20940 1.19901 1.23618 0.99592 0.98204 0.98253 1.76979 1.23575 0.97188 1.14894 0.88052 0.93512 0.93125 0.86289 0.89135 0.79286 0.77222 0.93270 0.92474 0.92107 0.98122 0.97628 0.92965 0.80383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 10.10 71.98 0.73 -1.97 16 2 C 0.13 2.30 7.24 86.38 0.63 2.92 16 3 N -0.37 -10.34 3.71 -346.89 -1.29 -11.63 16 4 C -0.05 -1.35 11.52 83.47 0.96 -0.39 16 5 C 0.06 2.10 6.94 37.59 0.26 2.36 16 6 N -0.73 -27.43 5.03 -319.45 -1.61 -29.04 16 7 C 0.17 7.04 2.53 44.99 0.11 7.16 16 8 H 0.05 2.11 7.16 -2.39 -0.02 2.10 16 9 C -0.15 -5.19 9.50 71.98 0.68 -4.50 16 10 C 0.02 1.15 4.52 29.85 0.13 1.28 16 11 C -0.52 -28.79 8.84 25.60 0.23 -28.56 16 12 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 13 C 0.00 0.23 5.46 84.65 0.46 0.69 16 14 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 15 Si 0.95 44.65 29.54 68.60 2.03 46.67 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 C -0.01 -0.33 11.15 85.32 0.95 0.62 16 20 N -0.30 -9.98 12.42 -56.78 -0.70 -10.68 16 21 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 24 H 0.12 1.42 8.07 -2.39 -0.02 1.40 16 25 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.19 4.38 8.06 -2.91 -0.02 4.36 16 27 H 0.39 14.97 8.73 -92.71 -0.81 14.16 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.18 5.72 7.45 -2.91 -0.02 5.70 16 Total: -1.00 -65.82 291.91 4.12 -61.70 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.26 Total: 18.82 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 5.15 Total: -20.39 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -3.31 Total: -106.81 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.82 4.12 -61.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308514265.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.715 kcal (2) G-P(sol) polarization free energy of solvation -65.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds