Wall clock time and date at job start Mon Mar 30 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46911 * 109.46779 * 2 1 4 4 C 1.46902 * 110.99614 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47149 * 324.99463 * 4 3 2 6 6 C 1.52997 * 109.47094 * 85.00357 * 4 3 2 7 7 C 1.50706 * 109.46577 * 205.00147 * 4 3 2 8 8 C 1.34636 * 125.85752 * 155.00138 * 7 4 3 9 9 N 1.37297 * 106.83026 * 179.97438 * 8 7 4 10 10 C 1.37559 * 126.50868 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99799 * 179.97438 * 10 9 8 12 12 C 1.38934 * 120.00575 * 359.97438 * 10 9 8 13 13 N 1.31338 * 119.99885 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00397 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47098 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46912 * 119.99833 * 14 12 10 17 17 H 1.48498 * 109.47253 * 239.99850 * 14 12 10 18 18 C 1.36270 * 106.97698 * 0.02562 * 9 8 7 19 19 C 1.50692 * 125.74723 * 180.02562 * 18 9 8 20 20 N 1.30491 * 108.50667 * 359.76581 * 18 9 8 21 21 H 1.08994 * 109.47466 * 299.99980 * 1 2 3 22 22 H 1.09000 * 109.47454 * 60.00250 * 1 2 3 23 23 H 1.09004 * 109.46909 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47362 * 240.00474 * 2 1 3 25 25 H 1.09000 * 109.47454 * 119.99750 * 2 1 3 26 26 H 1.00897 * 110.99488 * 56.04576 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99508 * 6 4 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 6 4 3 29 29 H 1.09004 * 109.47261 * 59.99681 * 6 4 3 30 30 H 1.08003 * 126.58323 * 359.97438 * 8 7 4 31 31 H 0.96991 * 120.00347 * 180.02562 * 13 12 10 32 32 H 1.09003 * 109.47354 * 89.99972 * 19 18 9 33 33 H 1.08997 * 109.47316 * 209.99910 * 19 18 9 34 34 H 1.09007 * 109.47024 * 330.00101 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4880 1.4243 0.0006 5 1 3.8734 0.5926 0.5904 6 6 4.0018 1.3121 -1.4361 7 6 3.9555 2.7251 0.6012 8 6 5.1453 2.9373 1.1945 9 7 5.1604 4.2500 1.5967 10 6 6.1867 4.8949 2.2472 11 1 6.0860 5.9361 2.5157 12 6 7.3528 4.2069 2.5588 13 7 7.4751 2.9405 2.2327 14 14 8.7467 5.0829 3.4414 15 1 8.3627 6.4949 3.6941 16 1 9.0180 4.4041 4.7341 17 1 9.9678 5.0461 2.5971 18 6 3.9656 4.7925 1.2292 19 6 3.5354 6.2171 1.4666 20 7 3.2589 3.8722 0.6321 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6440 1.9013 0.7814 27 1 3.6637 0.3713 -1.8705 28 1 5.0914 1.3416 -1.4357 29 1 3.6163 2.1439 -2.0259 30 1 5.9359 2.2139 1.3284 31 1 8.2890 2.4600 2.4505 32 1 3.8339 6.8330 0.6182 33 1 2.4520 6.2554 1.5799 34 1 4.0091 6.5934 2.3733 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308531131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:17 Heat of formation + Delta-G solvation = 24.328424 kcal Electronic energy + Delta-G solvation = -15364.592316 eV Core-core repulsion = 12910.993777 eV Total energy + Delta-G solvation = -2453.598539 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.32171 -37.95768 -35.82711 -33.69697 -32.31811 -31.55705 -29.03390 -27.66766 -26.78622 -23.86591 -22.38545 -21.30463 -20.35931 -19.33834 -17.38861 -16.51734 -16.06305 -15.91073 -15.79987 -15.17443 -14.43348 -14.39763 -14.01431 -13.63018 -13.46153 -13.34432 -13.20384 -13.03069 -12.82993 -12.66367 -12.41005 -12.32717 -12.18076 -12.02314 -11.70539 -11.44599 -10.34444 -10.23408 -9.22989 -8.61534 -8.60526 -6.47220 1.28903 1.36518 1.53965 1.86972 2.10413 2.53238 3.01578 3.16367 3.38359 3.92846 4.20883 4.33122 4.39797 4.61035 4.65279 4.68650 4.74419 4.86420 4.87298 4.95100 5.02981 5.08111 5.13822 5.17351 5.23654 5.34986 5.45466 5.55572 5.61297 6.26736 6.39291 6.51863 6.59863 6.86917 7.53320 7.83682 8.36390 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.037453 B = 0.007239 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.416342 B = 3866.764991 C = 4307.714114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 N -0.679 5.679 4 C 0.188 3.812 5 H 0.037 0.963 6 C -0.117 4.117 7 C -0.078 4.078 8 C -0.081 4.081 9 N -0.281 5.281 10 C -0.365 4.365 11 H 0.123 0.877 12 C -0.003 4.003 13 N -0.873 5.873 14 Si 1.022 2.978 15 H -0.250 1.250 16 H -0.269 1.269 17 H -0.270 1.270 18 C 0.071 3.929 19 C -0.034 4.034 20 N -0.506 5.506 21 H 0.048 0.952 22 H 0.058 0.942 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.021 0.979 26 H 0.339 0.661 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.179 0.821 31 H 0.284 0.716 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 -2.134 -0.625 4.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 N -0.311 5.311 4 C 0.078 3.922 5 H 0.055 0.945 6 C -0.175 4.175 7 C -0.213 4.213 8 C -0.224 4.224 9 N 0.053 4.947 10 C -0.494 4.494 11 H 0.141 0.859 12 C -0.209 4.209 13 N -0.505 5.505 14 Si 0.841 3.159 15 H -0.173 1.173 16 H -0.194 1.194 17 H -0.195 1.195 18 C -0.186 4.186 19 C -0.093 4.093 20 N -0.228 5.228 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.040 0.960 26 H 0.157 0.843 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.195 0.805 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.519 -1.967 -1.520 5.157 hybrid contribution 1.832 -0.239 1.562 2.419 sum -2.687 -2.205 0.041 3.476 Atomic orbital electron populations 1.21694 0.93657 1.02424 1.01993 1.22101 0.96779 0.88995 1.00210 1.60497 1.06708 1.13533 1.50379 1.19419 0.87574 0.89965 0.95278 0.94506 1.21611 0.99339 1.01406 0.95142 1.20642 0.94391 0.95831 1.10390 1.23358 1.01628 0.88520 1.08877 1.41909 1.11381 1.08236 1.33163 1.20582 0.94215 0.98124 1.36486 0.85908 1.26675 1.01495 0.96203 0.96531 1.69848 1.28672 1.10025 1.41959 0.84467 0.75449 0.78708 0.77260 1.17325 1.19446 1.19473 1.23772 0.86001 0.99212 1.09625 1.19812 1.01703 0.86130 1.01612 1.69669 1.32232 0.99649 1.21262 0.93321 0.92274 0.90345 0.90595 0.96037 0.84345 0.91016 0.93610 0.93904 0.80494 0.90533 0.91358 0.89801 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 10.17 71.98 0.73 -2.54 16 2 C 0.05 1.38 6.20 86.30 0.54 1.91 16 3 N -0.68 -25.10 6.21 -495.43 -3.08 -28.17 16 4 C 0.19 7.79 3.07 44.17 0.14 7.92 16 5 H 0.04 1.51 7.80 -2.39 -0.02 1.49 16 6 C -0.12 -4.36 9.40 71.98 0.68 -3.68 16 7 C -0.08 -3.96 5.80 41.37 0.24 -3.72 16 8 C -0.08 -4.44 10.30 83.01 0.85 -3.58 16 9 N -0.28 -15.40 2.93 -340.18 -1.00 -16.40 16 10 C -0.37 -19.12 9.92 83.96 0.83 -18.28 16 11 H 0.12 5.88 7.07 -2.91 -0.02 5.86 16 12 C 0.00 -0.17 5.48 84.93 0.47 0.30 16 13 N -0.87 -45.65 10.19 21.65 0.22 -45.43 16 14 Si 1.02 37.72 29.55 68.60 2.03 39.75 16 15 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 16 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 17 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 18 C 0.07 3.59 7.91 137.73 1.09 4.68 16 19 C -0.03 -1.33 10.13 71.23 0.72 -0.61 16 20 N -0.51 -26.06 10.74 -175.37 -1.88 -27.95 16 21 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.08 2.01 7.44 -2.39 -0.02 2.00 16 25 H 0.02 0.62 8.05 -2.39 -0.02 0.60 16 26 H 0.34 13.52 8.07 -89.70 -0.72 12.80 16 27 H 0.07 2.20 7.45 -2.39 -0.02 2.19 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.70 8.14 -2.38 -0.02 1.69 16 30 H 0.18 10.11 5.60 -2.91 -0.02 10.09 16 31 H 0.28 13.54 8.31 -92.72 -0.77 12.77 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.07 2.51 7.37 -2.38 -0.02 2.49 16 Total: -1.00 -61.66 283.45 2.94 -58.72 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: 0.36 Total: 37.08 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 6.28 Total: -17.60 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -5.74 Total: -117.95 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Total: -61.66 2.94 -58.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308531131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.053 kcal (2) G-P(sol) polarization free energy of solvation -61.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds