Wall clock time and date at job start Mon Mar 30 2020 02:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47176 * 2 1 4 4 C 1.34943 * 126.03826 * 125.25597 * 3 2 1 5 5 C 1.35314 * 107.74537 * 180.14714 * 4 3 2 6 6 C 1.50706 * 126.04126 * 179.87408 * 5 4 3 7 7 N 1.46893 * 109.47176 * 269.72264 * 6 5 4 8 8 C 1.46903 * 110.99924 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47239 * 34.99837 * 8 7 6 10 10 C 1.52999 * 109.47145 * 274.99722 * 8 7 6 11 11 C 1.50708 * 109.47148 * 154.99657 * 8 7 6 12 12 H 1.07999 * 120.00002 * 0.02562 * 11 8 7 13 13 C 1.37873 * 120.00015 * 179.97438 * 11 8 7 14 14 N 1.31519 * 120.00060 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 120.00249 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47140 * 59.99689 * 15 13 11 17 17 H 1.48494 * 109.47401 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46957 * 300.00209 * 15 13 11 19 19 C 1.39871 * 107.92188 * 359.61804 * 5 4 3 20 20 N 1.30839 * 108.19988 * 0.23776 * 19 5 4 21 21 H 1.09001 * 109.47209 * 299.99824 * 1 2 3 22 22 H 1.08994 * 109.47149 * 60.00028 * 1 2 3 23 23 H 1.09000 * 109.46942 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47209 * 240.00176 * 2 1 3 25 25 H 1.08994 * 109.47149 * 119.99972 * 2 1 3 26 26 H 1.07997 * 126.12620 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.46953 * 29.71724 * 6 5 4 28 28 H 1.09000 * 109.47318 * 149.71321 * 6 5 4 29 29 H 1.00893 * 111.00654 * 56.04333 * 7 6 5 30 30 H 1.09008 * 109.47197 * 299.99972 * 10 8 7 31 31 H 1.08996 * 109.46853 * 59.99926 * 10 8 7 32 32 H 1.08994 * 109.47047 * 179.97438 * 10 8 7 33 33 H 0.96997 * 120.00033 * 179.97438 * 14 13 11 34 34 H 1.07997 * 125.89735 * 180.21962 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8769 1.9198 0.8910 5 6 3.0714 3.2137 0.5461 6 6 3.9548 4.2000 1.2659 7 7 3.1722 4.8987 2.2941 8 6 4.0029 5.8701 3.0183 9 1 4.7273 6.3108 2.3334 10 6 4.7417 5.1617 4.1555 11 6 3.1257 6.9551 3.5881 12 1 2.0580 6.9257 3.4286 13 6 3.6862 7.9846 4.3140 14 7 4.9863 8.0195 4.5095 15 14 2.5990 9.3290 5.0209 16 1 1.6121 8.7282 5.9537 17 1 3.4386 10.3103 5.7539 18 1 1.8819 10.0170 3.9174 19 6 2.3125 3.4724 -0.5999 20 7 1.6808 2.3747 -0.9282 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.3264 1.4100 1.7303 27 1 4.7825 3.6700 1.7371 28 1 4.3468 4.9248 0.5524 29 1 2.7447 4.2432 2.9309 30 1 4.0172 4.7210 4.8405 31 1 5.3760 4.3770 3.7434 32 1 5.3583 5.8823 4.6926 33 1 5.3807 8.7440 5.0199 34 1 2.2572 4.4156 -1.1232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308594121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:25 Heat of formation + Delta-G solvation = 72.974644 kcal Electronic energy + Delta-G solvation = -14838.632574 eV Core-core repulsion = 12387.143494 eV Total energy + Delta-G solvation = -2451.489081 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93183 -36.03459 -34.40474 -32.56698 -30.41541 -29.90038 -27.52330 -25.10742 -24.24857 -23.24801 -20.53552 -20.05345 -19.78857 -16.95608 -16.08214 -15.42324 -14.69361 -14.44898 -14.03712 -13.84438 -13.54290 -13.11445 -12.64651 -12.38840 -12.20569 -12.11300 -11.60595 -11.47093 -11.17456 -10.85343 -10.79339 -10.44078 -10.28669 -10.06797 -9.81886 -9.17613 -8.95249 -8.29961 -8.11806 -7.08632 -5.92269 -3.95169 2.11291 2.66619 3.12863 3.38872 3.42325 3.46454 4.45979 4.50382 4.81851 4.96883 5.04546 5.23143 5.38892 5.39420 5.59884 5.68844 5.69365 5.85961 5.98284 6.20482 6.38096 6.58848 6.74650 6.89391 6.95398 7.16466 7.23123 7.45595 7.80179 7.94977 7.96646 8.35781 8.65010 8.71579 9.12327 9.70033 11.14630 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.046239 B = 0.005203 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.398926 B = 5380.444739 C = 5549.632669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 N -0.380 5.380 4 C 0.047 3.953 5 C -0.213 4.213 6 C 0.134 3.866 7 N -0.679 5.679 8 C 0.210 3.790 9 H 0.034 0.966 10 C -0.168 4.168 11 C -0.493 4.493 12 H 0.061 0.939 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.066 3.934 20 N -0.306 5.306 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.167 0.833 27 H 0.021 0.979 28 H 0.071 0.929 29 H 0.323 0.677 30 H 0.026 0.974 31 H 0.004 0.996 32 H 0.088 0.912 33 H 0.259 0.741 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 -14.722 -6.700 16.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 N -0.164 5.164 4 C -0.099 4.099 5 C -0.225 4.225 6 C 0.003 3.997 7 N -0.309 5.309 8 C 0.102 3.898 9 H 0.052 0.948 10 C -0.228 4.228 11 C -0.532 4.532 12 H 0.079 0.921 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.121 4.121 20 N -0.127 5.127 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.184 0.816 27 H 0.039 0.961 28 H 0.089 0.911 29 H 0.139 0.861 30 H 0.045 0.955 31 H 0.023 0.977 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.832 -14.829 -7.874 17.472 hybrid contribution 0.633 0.491 1.686 1.867 sum -4.199 -14.338 -6.188 16.171 Atomic orbital electron populations 1.22048 0.94036 1.02448 1.03729 1.21567 0.95922 0.78044 1.03210 1.48548 1.36031 1.09948 1.21865 1.22299 0.96202 0.95077 0.96325 1.20267 1.07464 0.94290 1.00476 1.20158 0.92099 0.93053 0.94341 1.60833 1.34208 1.18527 1.17316 1.19189 0.91280 0.89161 0.90182 0.94822 1.22431 1.00090 0.99011 1.01248 1.21145 0.94232 1.06363 1.31415 0.92060 1.24944 0.95027 0.98090 0.96501 1.69875 1.09870 1.32666 1.41508 0.86579 0.80261 0.81529 0.79098 1.20459 1.21519 1.20296 1.23791 0.95019 0.96943 0.96319 1.77237 1.24186 0.97239 1.14061 0.91984 0.91153 0.91066 0.90315 0.89029 0.81574 0.96058 0.91075 0.86064 0.95471 0.97656 0.89332 0.93101 0.80147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.10 37.16 0.38 -1.07 16 2 C 0.13 1.23 7.23 -4.04 -0.03 1.20 16 3 N -0.38 -5.16 3.68 -61.37 -0.23 -5.38 16 4 C 0.05 0.66 11.36 -17.23 -0.20 0.46 16 5 C -0.21 -3.47 5.61 -105.05 -0.59 -4.06 16 6 C 0.13 2.45 5.96 -4.98 -0.03 2.42 16 7 N -0.68 -14.70 6.22 -109.22 -0.68 -15.38 16 8 C 0.21 5.31 2.57 -68.86 -0.18 5.14 16 9 H 0.03 0.93 7.80 -51.93 -0.41 0.53 16 10 C -0.17 -4.06 8.94 37.16 0.33 -3.73 16 11 C -0.49 -13.83 8.84 -34.44 -0.30 -14.13 16 12 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 14 N -0.90 -25.93 11.32 55.43 0.63 -25.30 16 15 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.07 1.06 11.96 -17.36 -0.21 0.85 16 20 N -0.31 -4.86 12.42 30.62 0.38 -4.48 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.09 0.61 8.07 -51.93 -0.42 0.19 16 26 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.02 0.38 7.43 -51.93 -0.39 0.00 16 28 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 29 H 0.32 6.75 8.46 -39.30 -0.33 6.41 16 30 H 0.03 0.62 8.13 -51.92 -0.42 0.20 16 31 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 32 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.18 2.60 8.06 -52.49 -0.42 2.17 16 LS Contribution 288.65 15.07 4.35 4.35 Total: -1.00 -30.92 288.65 -6.66 -37.58 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.17 Total: 3.36 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -0.92 Total: -11.48 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.10 Total: -50.55 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.92 -6.66 -37.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308594121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.552 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds