Wall clock time and date at job start Mon Mar 30 2020 02:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47176 * 2 1 4 4 C 1.34943 * 126.03826 * 125.25597 * 3 2 1 5 5 C 1.35314 * 107.74537 * 180.14714 * 4 3 2 6 6 C 1.50706 * 126.04126 * 179.87408 * 5 4 3 7 7 N 1.46893 * 109.47176 * 269.72264 * 6 5 4 8 8 C 1.46903 * 110.99924 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47239 * 34.99837 * 8 7 6 10 10 C 1.52999 * 109.47145 * 274.99722 * 8 7 6 11 11 C 1.50708 * 109.47148 * 154.99657 * 8 7 6 12 12 H 1.07999 * 120.00002 * 0.02562 * 11 8 7 13 13 C 1.37873 * 120.00015 * 179.97438 * 11 8 7 14 14 N 1.31519 * 120.00060 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 120.00249 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47140 * 59.99689 * 15 13 11 17 17 H 1.48494 * 109.47401 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46957 * 300.00209 * 15 13 11 19 19 C 1.39871 * 107.92188 * 359.61804 * 5 4 3 20 20 N 1.30839 * 108.19988 * 0.23776 * 19 5 4 21 21 H 1.09001 * 109.47209 * 299.99824 * 1 2 3 22 22 H 1.08994 * 109.47149 * 60.00028 * 1 2 3 23 23 H 1.09000 * 109.46942 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47209 * 240.00176 * 2 1 3 25 25 H 1.08994 * 109.47149 * 119.99972 * 2 1 3 26 26 H 1.07997 * 126.12620 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.46953 * 29.71724 * 6 5 4 28 28 H 1.09000 * 109.47318 * 149.71321 * 6 5 4 29 29 H 1.00893 * 111.00654 * 56.04333 * 7 6 5 30 30 H 1.09008 * 109.47197 * 299.99972 * 10 8 7 31 31 H 1.08996 * 109.46853 * 59.99926 * 10 8 7 32 32 H 1.08994 * 109.47047 * 179.97438 * 10 8 7 33 33 H 0.96997 * 120.00033 * 179.97438 * 14 13 11 34 34 H 1.07997 * 125.89735 * 180.21962 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8769 1.9198 0.8910 5 6 3.0714 3.2137 0.5461 6 6 3.9548 4.2000 1.2659 7 7 3.1722 4.8987 2.2941 8 6 4.0029 5.8701 3.0183 9 1 4.7273 6.3108 2.3334 10 6 4.7417 5.1617 4.1555 11 6 3.1257 6.9551 3.5881 12 1 2.0580 6.9257 3.4286 13 6 3.6862 7.9846 4.3140 14 7 4.9863 8.0195 4.5095 15 14 2.5990 9.3290 5.0209 16 1 1.6121 8.7282 5.9537 17 1 3.4386 10.3103 5.7539 18 1 1.8819 10.0170 3.9174 19 6 2.3125 3.4724 -0.5999 20 7 1.6808 2.3747 -0.9282 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.3264 1.4100 1.7303 27 1 4.7825 3.6700 1.7371 28 1 4.3468 4.9248 0.5524 29 1 2.7447 4.2432 2.9309 30 1 4.0172 4.7210 4.8405 31 1 5.3760 4.3770 3.7434 32 1 5.3583 5.8823 4.6926 33 1 5.3807 8.7440 5.0199 34 1 2.2572 4.4156 -1.1232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308594121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:25 Heat of formation + Delta-G solvation = 52.372093 kcal Electronic energy + Delta-G solvation = -14839.525968 eV Core-core repulsion = 12387.143494 eV Total energy + Delta-G solvation = -2452.382474 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.05921 -37.78908 -35.45055 -34.41339 -31.93952 -30.98642 -29.08592 -27.19168 -25.50818 -24.37975 -22.09480 -21.49692 -20.99292 -18.46221 -17.69703 -16.73139 -16.33848 -15.88941 -15.25650 -15.14691 -14.99514 -14.59440 -14.00646 -13.72524 -13.48566 -13.33556 -12.93665 -12.86902 -12.73195 -12.68786 -12.30333 -12.19476 -12.09723 -11.79971 -11.43391 -10.98849 -10.43888 -10.28151 -9.32670 -8.80814 -8.04867 -6.16001 1.00494 1.45543 1.47244 1.54997 1.72018 1.88894 2.48126 3.22772 3.62033 3.97540 4.03540 4.12726 4.23872 4.35537 4.40448 4.58351 4.77330 4.82654 4.84207 4.94356 4.95137 5.02758 5.17511 5.25759 5.29785 5.49910 5.74381 5.75248 5.88847 6.22685 6.33954 6.74126 6.80185 6.91632 7.01526 7.54082 8.99867 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.046239 B = 0.005203 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.398926 B = 5380.444739 C = 5549.632669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 N -0.375 5.375 4 C 0.063 3.937 5 C -0.241 4.241 6 C 0.143 3.857 7 N -0.684 5.684 8 C 0.214 3.786 9 H 0.003 0.997 10 C -0.155 4.155 11 C -0.514 4.514 12 H 0.051 0.949 13 C 0.009 3.991 14 N -0.922 5.922 15 Si 0.959 3.041 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.275 1.275 19 C 0.051 3.949 20 N -0.328 5.328 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.125 0.875 26 H 0.200 0.800 27 H 0.029 0.971 28 H 0.058 0.942 29 H 0.329 0.671 30 H 0.031 0.969 31 H 0.028 0.972 32 H 0.060 0.940 33 H 0.260 0.740 34 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 -16.398 -6.264 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.003 3.997 3 N -0.158 5.158 4 C -0.085 4.085 5 C -0.253 4.253 6 C 0.013 3.987 7 N -0.314 5.314 8 C 0.105 3.895 9 H 0.021 0.979 10 C -0.214 4.214 11 C -0.553 4.553 12 H 0.069 0.931 13 C -0.189 4.189 14 N -0.563 5.563 15 Si 0.785 3.215 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.201 1.201 19 C -0.134 4.134 20 N -0.150 5.150 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.120 0.880 24 H 0.111 0.889 25 H 0.143 0.857 26 H 0.217 0.783 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.146 0.854 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.470 -16.534 -7.461 18.946 hybrid contribution 0.812 0.898 1.505 1.932 sum -4.658 -15.636 -5.956 17.368 Atomic orbital electron populations 1.22014 0.93826 1.03939 1.01986 1.22044 0.96140 0.75971 1.05584 1.48954 1.35105 1.10943 1.20768 1.22723 0.95024 0.94339 0.96413 1.20099 1.08834 0.95105 1.01261 1.20008 0.92387 0.93065 0.93195 1.60698 1.34317 1.18946 1.17420 1.18960 0.90723 0.89750 0.90063 0.97905 1.22222 0.99872 0.98766 1.00561 1.21439 0.94102 1.07782 1.31996 0.93072 1.25686 0.96267 1.00135 0.96771 1.70001 1.11183 1.33255 1.41844 0.85606 0.78670 0.78863 0.78401 1.19749 1.20918 1.20086 1.23942 0.95331 0.97468 0.96702 1.77190 1.24747 0.97762 1.15281 0.93312 0.93227 0.87978 0.88884 0.85722 0.78339 0.95266 0.92375 0.85423 0.94989 0.95284 0.92107 0.93048 0.79867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.10 71.98 0.73 -1.69 16 2 C 0.12 1.84 7.23 86.38 0.62 2.46 16 3 N -0.37 -9.30 3.68 -348.06 -1.28 -10.58 16 4 C 0.06 1.59 11.36 83.54 0.95 2.54 16 5 C -0.24 -7.61 5.61 -20.14 -0.11 -7.72 16 6 C 0.14 5.19 5.96 85.56 0.51 5.70 16 7 N -0.68 -29.48 6.22 -499.45 -3.11 -32.59 16 8 C 0.21 10.94 2.57 44.17 0.11 11.05 16 9 H 0.00 0.17 7.80 -2.39 -0.02 0.15 16 10 C -0.15 -7.40 8.94 71.98 0.64 -6.75 16 11 C -0.51 -29.12 8.84 25.60 0.23 -28.90 16 12 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 13 C 0.01 0.53 5.30 84.65 0.45 0.98 16 14 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 15 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 C 0.05 1.63 11.96 85.24 1.02 2.65 16 20 N -0.33 -10.14 12.42 -57.02 -0.71 -10.85 16 21 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.12 1.10 8.07 -2.39 -0.02 1.08 16 26 H 0.20 3.63 8.06 -2.91 -0.02 3.61 16 27 H 0.03 1.01 7.43 -2.39 -0.02 0.99 16 28 H 0.06 2.22 8.06 -2.39 -0.02 2.20 16 29 H 0.33 13.42 8.46 -89.70 -0.76 12.66 16 30 H 0.03 1.45 8.13 -2.38 -0.02 1.43 16 31 H 0.03 1.20 7.45 -2.39 -0.02 1.18 16 32 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 33 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 34 H 0.18 5.43 8.06 -2.91 -0.02 5.41 16 Total: -1.00 -66.39 288.65 2.64 -63.75 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.32 Total: 16.69 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 5.15 Total: -19.67 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -4.85 Total: -107.39 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -66.39 2.64 -63.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308594121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.121 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds