Wall clock time and date at job start Mon Mar 30 2020 02:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.50704 * 109.46822 * 175.00037 * 4 2 1 6 6 C 1.39869 * 126.03889 * 269.68908 * 5 4 2 7 7 N 1.30835 * 108.20032 * 179.81875 * 6 5 4 8 8 N 1.40084 * 108.20714 * 0.44125 * 7 6 5 9 9 C 1.46502 * 126.04002 * 179.69070 * 8 7 6 10 10 C 1.34951 * 107.92443 * 359.71984 * 8 7 6 11 11 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 12 12 C 1.46901 * 110.99793 * 275.00325 * 11 2 1 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 2 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 22 22 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 24 24 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 25 25 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 26 26 H 1.08002 * 125.89585 * 0.02562 * 6 5 4 27 27 H 1.08995 * 109.47558 * 270.03113 * 9 8 7 28 28 H 1.09002 * 109.46724 * 30.02905 * 9 8 7 29 29 H 1.09007 * 109.46789 * 150.02223 * 9 8 7 30 30 H 1.08000 * 126.12695 * 180.02562 * 10 8 7 31 31 H 1.00898 * 110.99995 * 38.95403 * 11 2 1 32 32 H 1.09002 * 109.47401 * 59.99808 * 12 11 2 33 33 H 1.09001 * 109.46874 * 299.99821 * 12 11 2 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 6 4.2691 0.3993 -1.9443 7 7 5.5433 0.1505 -1.7817 8 7 5.6674 -1.0371 -1.0491 9 6 6.9237 -1.6779 -0.6526 10 6 4.4252 -1.4868 -0.7736 11 7 2.0196 -0.6925 1.1995 12 6 2.0823 0.2227 2.3469 13 6 2.5872 -0.5217 3.5561 14 1 2.8369 -1.5696 3.4797 15 6 2.7313 0.1354 4.7596 16 7 2.4276 1.4116 4.8525 17 14 3.3577 -0.7871 6.2582 18 1 4.7138 -1.3238 5.9780 19 1 3.4210 0.1379 7.4182 20 1 2.4360 -1.9089 6.5701 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.7516 -1.7715 -1.2055 25 1 1.6054 -0.2618 -2.1369 26 1 3.8510 1.2438 -2.4719 27 1 7.2364 -2.3760 -1.4291 28 1 7.6925 -0.9172 -0.5169 29 1 6.7769 -2.2172 0.2832 30 1 4.1801 -2.3820 -0.2214 31 1 1.4495 -1.4979 1.4101 32 1 1.0869 0.6164 2.5525 33 1 2.7587 1.0463 2.1182 34 1 2.5287 1.8738 5.6993 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308641132.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:47 Heat of formation + Delta-G solvation = 67.172059 kcal Electronic energy + Delta-G solvation = -15156.946772 eV Core-core repulsion = 12705.206073 eV Total energy + Delta-G solvation = -2451.740699 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.70528 -36.58953 -33.32008 -32.62835 -30.93126 -29.38731 -27.25955 -25.88163 -24.82502 -21.77714 -20.71060 -20.32642 -19.53477 -16.52060 -16.15155 -15.04794 -14.87503 -14.22933 -14.12085 -13.79458 -13.35664 -13.09470 -12.60941 -12.40514 -12.27065 -11.94529 -11.77545 -11.37839 -11.21520 -11.01316 -10.70976 -10.60089 -10.36978 -10.00748 -9.80757 -9.15038 -8.96259 -8.45298 -7.81601 -7.12783 -5.99914 -4.01470 2.37779 2.93866 3.30315 3.32832 3.37171 3.39407 4.44267 4.85373 5.25392 5.30026 5.35641 5.38423 5.45089 5.55541 5.57739 5.73739 5.90452 5.95400 6.07082 6.23675 6.30238 6.38787 6.55876 6.68007 6.82098 7.11247 7.37843 7.47341 7.53374 7.82713 8.13109 8.20379 8.50654 8.72070 9.08312 9.62914 11.11142 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.008073 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.854472 B = 3467.670194 C = 4333.653228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.085 3.915 3 H 0.069 0.931 4 C -0.026 4.026 5 C -0.214 4.214 6 C 0.045 3.955 7 N -0.312 5.312 8 N -0.383 5.383 9 C 0.106 3.894 10 C 0.084 3.916 11 N -0.679 5.679 12 C 0.198 3.802 13 C -0.512 4.512 14 H 0.059 0.941 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.174 0.826 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.170 0.830 31 H 0.324 0.676 32 H -0.015 1.015 33 H 0.024 0.976 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.037 -5.937 -11.868 13.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.027 4.027 3 H 0.087 0.913 4 C -0.065 4.065 5 C -0.226 4.226 6 C -0.141 4.141 7 N -0.134 5.134 8 N -0.166 5.166 9 C -0.036 4.036 10 C -0.062 4.062 11 N -0.308 5.308 12 C 0.071 3.929 13 C -0.550 4.550 14 H 0.078 0.922 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.191 0.809 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.187 0.813 31 H 0.141 0.859 32 H 0.002 0.998 33 H 0.042 0.958 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.056 -5.374 -12.076 13.826 hybrid contribution -1.410 -0.481 1.495 2.110 sum 2.646 -5.855 -10.581 12.379 Atomic orbital electron populations 1.22507 0.98498 1.01297 1.01500 1.21528 0.91075 0.98206 0.91849 0.91312 1.19902 0.89511 1.00343 0.96763 1.19828 0.96369 0.98062 1.08293 1.23669 0.90551 0.99502 1.00382 1.77201 1.19704 1.00241 1.16268 1.48305 1.05828 1.19087 1.43371 1.21740 0.83667 0.97628 1.00538 1.22230 0.83780 1.00763 0.99398 1.60710 1.55147 1.10272 1.04687 1.19503 0.94966 0.91788 0.86644 1.21157 1.43428 0.96719 0.93721 0.92242 1.24987 0.95788 0.94902 0.98947 1.69954 1.48933 1.08969 1.25882 0.86590 0.79366 0.79452 0.82114 1.20320 1.21375 1.20315 0.93207 0.93074 0.92580 0.92045 0.92097 0.80871 0.91495 0.89815 0.89528 0.81270 0.85915 0.99768 0.95813 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 9.16 37.15 0.34 -2.42 16 2 C 0.08 1.48 2.58 -67.71 -0.17 1.30 16 3 H 0.07 1.34 7.80 -51.93 -0.40 0.93 16 4 C -0.03 -0.38 5.38 -27.88 -0.15 -0.53 16 5 C -0.21 -3.48 5.10 -105.05 -0.54 -4.01 16 6 C 0.04 0.73 11.96 -17.37 -0.21 0.52 16 7 N -0.31 -5.50 12.58 30.62 0.39 -5.11 16 8 N -0.38 -6.13 4.01 -68.16 -0.27 -6.40 16 9 C 0.11 1.21 11.47 59.85 0.69 1.90 16 10 C 0.08 1.35 11.31 -17.22 -0.19 1.15 16 11 N -0.68 -14.12 5.87 -107.99 -0.63 -14.76 16 12 C 0.20 5.20 5.24 -4.97 -0.03 5.18 16 13 C -0.51 -14.51 9.32 -34.44 -0.32 -14.83 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 17 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 23 H 0.06 0.98 7.45 -51.93 -0.39 0.59 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 31 H 0.32 6.46 8.46 -39.29 -0.33 6.13 16 32 H -0.02 -0.43 7.44 -51.93 -0.39 -0.82 16 33 H 0.02 0.70 8.06 -51.93 -0.42 0.28 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -32.61 292.00 -6.36 -38.97 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.28 Total: 2.84 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.68 Total: -10.25 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.21 Total: -52.77 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.61 -6.36 -38.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308641132.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.142 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds