Wall clock time and date at job start Mon Mar 30 2020 02:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.50704 * 109.46822 * 175.00037 * 4 2 1 6 6 C 1.39869 * 126.03889 * 269.68908 * 5 4 2 7 7 N 1.30835 * 108.20032 * 179.81875 * 6 5 4 8 8 N 1.40084 * 108.20714 * 0.44125 * 7 6 5 9 9 C 1.46502 * 126.04002 * 179.69070 * 8 7 6 10 10 C 1.34951 * 107.92443 * 359.71984 * 8 7 6 11 11 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 12 12 C 1.46901 * 110.99793 * 275.00325 * 11 2 1 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 2 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 22 22 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 24 24 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 25 25 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 26 26 H 1.08002 * 125.89585 * 0.02562 * 6 5 4 27 27 H 1.08995 * 109.47558 * 270.03113 * 9 8 7 28 28 H 1.09002 * 109.46724 * 30.02905 * 9 8 7 29 29 H 1.09007 * 109.46789 * 150.02223 * 9 8 7 30 30 H 1.08000 * 126.12695 * 180.02562 * 10 8 7 31 31 H 1.00898 * 110.99995 * 38.95403 * 11 2 1 32 32 H 1.09002 * 109.47401 * 59.99808 * 12 11 2 33 33 H 1.09001 * 109.46874 * 299.99821 * 12 11 2 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 6 4.2691 0.3993 -1.9443 7 7 5.5433 0.1505 -1.7817 8 7 5.6674 -1.0371 -1.0491 9 6 6.9237 -1.6779 -0.6526 10 6 4.4252 -1.4868 -0.7736 11 7 2.0196 -0.6925 1.1995 12 6 2.0823 0.2227 2.3469 13 6 2.5872 -0.5217 3.5561 14 1 2.8369 -1.5696 3.4797 15 6 2.7313 0.1354 4.7596 16 7 2.4276 1.4116 4.8525 17 14 3.3577 -0.7871 6.2582 18 1 4.7138 -1.3238 5.9780 19 1 3.4210 0.1379 7.4182 20 1 2.4360 -1.9089 6.5701 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.7516 -1.7715 -1.2055 25 1 1.6054 -0.2618 -2.1369 26 1 3.8510 1.2438 -2.4719 27 1 7.2364 -2.3760 -1.4291 28 1 7.6925 -0.9172 -0.5169 29 1 6.7769 -2.2172 0.2832 30 1 4.1801 -2.3820 -0.2214 31 1 1.4495 -1.4979 1.4101 32 1 1.0869 0.6164 2.5525 33 1 2.7587 1.0463 2.1182 34 1 2.5287 1.8738 5.6993 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308641132.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:47 Heat of formation + Delta-G solvation = 44.725446 kcal Electronic energy + Delta-G solvation = -15157.920131 eV Core-core repulsion = 12705.206073 eV Total energy + Delta-G solvation = -2452.714058 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.90722 -38.14647 -35.13291 -34.06384 -32.49389 -30.84476 -28.38578 -27.84702 -26.03494 -23.79835 -21.98578 -21.68678 -20.81669 -18.47950 -17.52202 -16.77582 -16.16441 -15.79612 -15.65003 -15.12623 -14.89638 -14.44823 -13.96664 -13.79555 -13.51541 -13.41268 -13.17485 -13.07093 -12.84859 -12.59302 -12.37015 -12.23410 -11.90254 -11.68780 -11.26608 -11.21808 -10.64369 -10.17399 -9.10183 -8.84114 -8.20125 -6.31017 1.16047 1.39754 1.43361 1.51167 1.86645 2.06662 2.40139 3.12944 3.73853 3.81405 4.19559 4.24508 4.42069 4.44231 4.48319 4.59292 4.70317 4.75498 4.82558 5.01398 5.05656 5.11633 5.18011 5.22704 5.43314 5.46427 5.54412 5.66730 5.93206 6.08954 6.34117 6.57600 6.83066 6.90910 7.03004 7.40248 8.91248 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.008073 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.854472 B = 3467.670194 C = 4333.653228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.083 3.917 3 H 0.040 0.960 4 C -0.014 4.014 5 C -0.232 4.232 6 C 0.034 3.966 7 N -0.345 5.345 8 N -0.390 5.390 9 C 0.097 3.903 10 C 0.073 3.927 11 N -0.671 5.671 12 C 0.218 3.782 13 C -0.529 4.529 14 H 0.067 0.933 15 C -0.003 4.003 16 N -0.938 5.938 17 Si 0.971 3.029 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.264 1.264 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.026 0.974 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.195 0.805 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.184 0.816 31 H 0.333 0.667 32 H -0.043 1.043 33 H -0.017 1.017 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 -7.779 -12.173 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.027 4.027 3 H 0.059 0.941 4 C -0.053 4.053 5 C -0.243 4.243 6 C -0.151 4.151 7 N -0.167 5.167 8 N -0.173 5.173 9 C -0.044 4.044 10 C -0.073 4.073 11 N -0.301 5.301 12 C 0.089 3.911 13 C -0.567 4.567 14 H 0.085 0.915 15 C -0.200 4.200 16 N -0.578 5.578 17 Si 0.795 3.205 18 H -0.194 1.194 19 H -0.212 1.212 20 H -0.188 1.188 21 H 0.096 0.904 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.212 0.788 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.201 0.799 31 H 0.150 0.850 32 H -0.025 1.025 33 H 0.001 0.999 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.047 -7.237 -12.409 14.925 hybrid contribution -1.393 0.109 1.534 2.075 sum 2.654 -7.128 -10.875 13.271 Atomic orbital electron populations 1.22398 0.96597 1.02501 1.01465 1.21609 0.92621 0.96873 0.91615 0.94131 1.19839 0.88571 1.01053 0.95807 1.20132 0.97310 0.98215 1.08616 1.24113 0.90386 1.00182 1.00415 1.77134 1.20580 1.01480 1.17511 1.48686 1.07057 1.18687 1.42823 1.22059 0.82215 0.98029 1.02073 1.22592 0.84098 1.01291 0.99327 1.60584 1.56160 1.09633 1.03768 1.19062 0.92227 0.91373 0.88393 1.21555 1.43382 0.97199 0.94598 0.91475 1.25983 0.95812 0.95745 1.02510 1.70107 1.50055 1.10825 1.26820 0.85414 0.79140 0.78242 0.77660 1.19353 1.21161 1.18827 0.90393 0.91202 0.95455 0.90449 0.89411 0.78846 0.88946 0.89782 0.88248 0.79894 0.84965 1.02495 0.99912 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.01 9.16 71.98 0.66 -4.35 16 2 C 0.08 2.85 2.58 44.91 0.12 2.96 16 3 H 0.04 1.61 7.80 -2.39 -0.02 1.59 16 4 C -0.01 -0.37 5.38 29.85 0.16 -0.21 16 5 C -0.23 -7.22 5.10 -20.14 -0.10 -7.32 16 6 C 0.03 1.08 11.96 85.24 1.02 2.10 16 7 N -0.34 -12.00 12.58 -57.02 -0.72 -12.71 16 8 N -0.39 -12.11 4.01 -369.55 -1.48 -13.59 16 9 C 0.10 2.08 11.47 127.77 1.47 3.54 16 10 C 0.07 2.26 11.31 83.54 0.94 3.21 16 11 N -0.67 -27.82 5.87 -495.56 -2.91 -30.73 16 12 C 0.22 11.79 5.24 85.56 0.45 12.24 16 13 C -0.53 -30.19 9.32 25.60 0.24 -29.95 16 14 H 0.07 3.65 7.81 -2.91 -0.02 3.62 16 15 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 16 N -0.94 -57.98 13.29 21.45 0.28 -57.69 16 17 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 23 H 0.03 0.94 7.45 -2.39 -0.02 0.92 16 24 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.19 4.98 8.06 -2.91 -0.02 4.96 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.18 4.97 8.06 -2.91 -0.02 4.95 16 31 H 0.33 12.89 8.46 -89.70 -0.76 12.13 16 32 H -0.04 -2.49 7.44 -2.39 -0.02 -2.51 16 33 H -0.02 -1.07 8.06 -2.39 -0.02 -1.09 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -71.13 292.00 2.93 -68.20 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.31 Total: 17.48 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 5.41 Total: -17.48 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -4.82 Total: -114.73 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -71.13 2.93 -68.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308641132.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.928 kcal (2) G-P(sol) polarization free energy of solvation -71.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds