Wall clock time and date at job start Mon Mar 30 2020 02:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46885 * 2 1 4 4 N 1.46904 * 109.47247 * 119.99224 * 2 1 3 5 5 C 1.46906 * 111.00240 * 275.00896 * 4 2 1 6 6 C 1.50697 * 109.47311 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99729 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00279 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99558 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00196 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47067 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46889 * 119.99838 * 10 8 6 13 13 H 1.48501 * 109.47183 * 240.00105 * 10 8 6 14 14 C 1.53001 * 109.47823 * 239.99568 * 2 1 3 15 15 H 1.08990 * 109.47338 * 185.00034 * 14 2 1 16 16 C 1.53003 * 109.46900 * 305.00284 * 14 2 1 17 17 N 1.46500 * 109.46991 * 64.99660 * 14 2 1 18 18 C 1.34947 * 126.04040 * 275.00665 * 17 14 2 19 19 C 1.35311 * 107.75028 * 180.02562 * 18 17 14 20 20 C 1.39876 * 107.91749 * 359.97438 * 19 18 17 21 21 N 1.30834 * 108.20073 * 0.27043 * 20 19 18 22 22 H 1.08997 * 109.47683 * 300.00147 * 1 2 3 23 23 H 1.08998 * 109.47259 * 60.00756 * 1 2 3 24 24 H 1.09006 * 109.46885 * 180.02562 * 1 2 3 25 25 H 1.00897 * 111.00234 * 151.04996 * 4 2 1 26 26 H 1.09007 * 109.46567 * 299.99595 * 5 4 2 27 27 H 1.08995 * 109.47249 * 59.99050 * 5 4 2 28 28 H 0.96999 * 119.99417 * 179.97438 * 9 8 6 29 29 H 1.08994 * 109.47228 * 179.97438 * 16 14 2 30 30 H 1.09008 * 109.46742 * 299.99888 * 16 14 2 31 31 H 1.08997 * 109.47319 * 59.99040 * 16 14 2 32 32 H 1.08009 * 126.12504 * 0.02894 * 18 17 14 33 33 H 1.08001 * 126.04065 * 180.02562 * 19 18 17 34 34 H 1.08002 * 125.89548 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6923 1.1995 5 6 2.0823 0.2228 2.3470 6 6 2.5872 -0.5214 3.5562 7 1 2.8362 -1.5696 3.4800 8 6 2.7312 0.1357 4.7597 9 7 2.4284 1.4122 4.8522 10 14 3.3564 -0.7870 6.2587 11 1 3.6231 -2.2015 5.8936 12 1 4.6104 -0.1550 6.7415 13 1 2.3320 -0.7383 7.3327 14 6 2.0401 -0.7213 -1.2491 15 1 3.1264 -0.7995 -1.2054 16 6 1.4301 -2.1230 -1.3135 17 7 1.6526 0.0352 -2.4424 18 6 0.4712 -0.0520 -3.0887 19 6 0.5095 0.8044 -4.1356 20 6 1.7570 1.4372 -4.1284 21 7 2.4450 0.9728 -3.1171 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 2.9173 -1.1203 1.0289 26 1 2.7587 1.0465 2.1182 27 1 1.0869 0.6166 2.5525 28 1 2.5294 1.8744 5.6990 29 1 1.7931 -2.6367 -2.2036 30 1 1.7184 -2.6858 -0.4256 31 1 0.3438 -2.0448 -1.3571 32 1 -0.3568 -0.6910 -2.8187 33 1 -0.2833 0.9707 -4.8499 34 1 2.0956 2.1774 -4.8383 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308642777.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:16 Heat of formation + Delta-G solvation = 74.189003 kcal Electronic energy + Delta-G solvation = -15219.210950 eV Core-core repulsion = 12767.774528 eV Total energy + Delta-G solvation = -2451.436422 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13896 -37.38808 -33.87436 -32.18965 -29.99098 -29.65417 -28.57593 -26.32391 -24.53855 -22.17420 -20.92334 -20.60624 -19.31298 -17.04373 -16.46723 -15.37242 -15.06031 -14.76983 -14.36024 -13.91970 -13.53168 -12.98289 -12.78229 -12.52397 -12.29166 -12.00015 -11.81445 -11.62219 -11.45220 -10.92817 -10.79413 -10.65894 -10.54506 -10.38728 -9.98609 -9.28541 -9.17196 -8.53252 -8.45759 -7.45600 -6.07082 -4.09634 2.04570 2.62576 2.95442 3.28703 3.36023 3.40580 4.39494 4.59533 4.89051 4.90894 5.09099 5.15118 5.20571 5.29327 5.56027 5.64208 5.75134 5.80930 5.89325 5.99227 6.09616 6.13904 6.23875 6.38146 6.64216 6.77022 7.13178 7.21850 7.34502 7.72062 7.85889 8.06152 8.26316 8.50151 8.99344 9.55546 11.04105 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.055187 B = 0.005450 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.239851 B = 5136.466913 C = 5272.211847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.043 0.957 4 N -0.677 5.677 5 C 0.195 3.805 6 C -0.515 4.515 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.900 3.100 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.155 3.845 15 H 0.097 0.903 16 C -0.156 4.156 17 N -0.354 5.354 18 C 0.061 3.939 19 C -0.286 4.286 20 C 0.036 3.964 21 N -0.299 5.299 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.329 0.671 26 H -0.013 1.013 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.170 0.830 33 H 0.143 0.857 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -3.894 -15.188 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 H 0.061 0.939 4 N -0.309 5.309 5 C 0.068 3.932 6 C -0.553 4.553 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.728 3.272 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.053 3.947 15 H 0.115 0.885 16 C -0.215 4.215 17 N -0.137 5.137 18 C -0.086 4.086 19 C -0.316 4.316 20 C -0.149 4.149 21 N -0.120 5.120 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.146 0.854 26 H 0.005 0.995 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.187 0.813 33 H 0.161 0.839 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.435 -4.017 -14.114 15.071 hybrid contribution 0.252 0.296 0.227 0.450 sum -3.184 -3.721 -13.887 14.725 Atomic orbital electron populations 1.21897 0.94874 1.02017 1.01219 1.21788 0.96500 0.96323 0.89167 0.93935 1.60856 1.32341 1.34584 1.03070 1.19623 0.96698 0.90156 0.86674 1.21189 1.43471 0.96758 0.93931 0.91824 1.24997 0.95603 0.94891 0.99082 1.69980 1.48745 1.09020 1.25889 0.86414 0.78376 0.79925 0.82529 1.19626 1.21074 1.20979 1.21580 1.00986 0.90733 0.81379 0.88456 1.22170 1.01819 0.94029 1.03435 1.48944 1.10797 1.31597 1.22341 1.22458 0.91013 1.00878 0.94297 1.21446 1.00475 1.05576 1.04067 1.23815 0.93609 1.00419 0.97084 1.77377 1.19124 1.06492 1.09019 0.91951 0.93508 0.91819 0.85422 0.99489 0.95210 0.92903 0.92567 0.88629 0.91329 0.81326 0.83941 0.80466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.57 37.16 0.32 -1.97 16 2 C 0.07 1.30 2.60 -67.71 -0.18 1.12 16 3 H 0.04 0.88 7.80 -51.93 -0.40 0.47 16 4 N -0.68 -13.78 5.75 -107.98 -0.62 -14.40 16 5 C 0.19 5.05 5.24 -4.97 -0.03 5.03 16 6 C -0.51 -14.38 9.32 -34.44 -0.32 -14.70 16 7 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 10 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.16 2.26 3.09 -67.93 -0.21 2.05 16 15 H 0.10 1.46 8.02 -51.93 -0.42 1.05 16 16 C -0.16 -1.86 8.23 37.16 0.31 -1.55 16 17 N -0.35 -5.23 3.43 -54.86 -0.19 -5.42 16 18 C 0.06 0.76 8.54 -17.23 -0.15 0.61 16 19 C -0.29 -3.40 10.80 -40.01 -0.43 -3.83 16 20 C 0.04 0.48 12.03 -17.36 -0.21 0.27 16 21 N -0.30 -4.81 12.58 30.63 0.39 -4.43 16 22 H 0.06 1.13 7.45 -51.93 -0.39 0.75 16 23 H 0.05 0.68 6.20 -51.93 -0.32 0.35 16 24 H 0.06 0.93 6.35 -51.93 -0.33 0.60 16 25 H 0.33 6.34 8.27 -39.29 -0.33 6.01 16 26 H -0.01 -0.36 8.06 -51.92 -0.42 -0.78 16 27 H 0.03 0.83 7.44 -51.93 -0.39 0.45 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.18 7.75 -51.92 -0.40 0.78 16 31 H 0.07 0.75 5.36 -51.93 -0.28 0.47 16 32 H 0.17 1.64 7.20 -52.48 -0.38 1.26 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 280.06 15.07 4.22 4.22 Total: -1.00 -31.29 280.06 -6.34 -37.64 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.86 Total: 3.48 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -0.99 Total: -11.48 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.31 Total: -50.37 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.29 -6.34 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308642777.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.825 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds