Wall clock time and date at job start Mon Mar 30 2020 02:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46885 * 2 1 4 4 N 1.46904 * 109.47247 * 119.99224 * 2 1 3 5 5 C 1.46906 * 111.00240 * 275.00896 * 4 2 1 6 6 C 1.50697 * 109.47311 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99729 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00279 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99558 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00196 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47067 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46889 * 119.99838 * 10 8 6 13 13 H 1.48501 * 109.47183 * 240.00105 * 10 8 6 14 14 C 1.53001 * 109.47823 * 239.99568 * 2 1 3 15 15 H 1.08990 * 109.47338 * 185.00034 * 14 2 1 16 16 C 1.53003 * 109.46900 * 305.00284 * 14 2 1 17 17 N 1.46500 * 109.46991 * 64.99660 * 14 2 1 18 18 C 1.34947 * 126.04040 * 275.00665 * 17 14 2 19 19 C 1.35311 * 107.75028 * 180.02562 * 18 17 14 20 20 C 1.39876 * 107.91749 * 359.97438 * 19 18 17 21 21 N 1.30834 * 108.20073 * 0.27043 * 20 19 18 22 22 H 1.08997 * 109.47683 * 300.00147 * 1 2 3 23 23 H 1.08998 * 109.47259 * 60.00756 * 1 2 3 24 24 H 1.09006 * 109.46885 * 180.02562 * 1 2 3 25 25 H 1.00897 * 111.00234 * 151.04996 * 4 2 1 26 26 H 1.09007 * 109.46567 * 299.99595 * 5 4 2 27 27 H 1.08995 * 109.47249 * 59.99050 * 5 4 2 28 28 H 0.96999 * 119.99417 * 179.97438 * 9 8 6 29 29 H 1.08994 * 109.47228 * 179.97438 * 16 14 2 30 30 H 1.09008 * 109.46742 * 299.99888 * 16 14 2 31 31 H 1.08997 * 109.47319 * 59.99040 * 16 14 2 32 32 H 1.08009 * 126.12504 * 0.02894 * 18 17 14 33 33 H 1.08001 * 126.04065 * 180.02562 * 19 18 17 34 34 H 1.08002 * 125.89548 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6923 1.1995 5 6 2.0823 0.2228 2.3470 6 6 2.5872 -0.5214 3.5562 7 1 2.8362 -1.5696 3.4800 8 6 2.7312 0.1357 4.7597 9 7 2.4284 1.4122 4.8522 10 14 3.3564 -0.7870 6.2587 11 1 3.6231 -2.2015 5.8936 12 1 4.6104 -0.1550 6.7415 13 1 2.3320 -0.7383 7.3327 14 6 2.0401 -0.7213 -1.2491 15 1 3.1264 -0.7995 -1.2054 16 6 1.4301 -2.1230 -1.3135 17 7 1.6526 0.0352 -2.4424 18 6 0.4712 -0.0520 -3.0887 19 6 0.5095 0.8044 -4.1356 20 6 1.7570 1.4372 -4.1284 21 7 2.4450 0.9728 -3.1171 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 2.9173 -1.1203 1.0289 26 1 2.7587 1.0465 2.1182 27 1 1.0869 0.6166 2.5525 28 1 2.5294 1.8744 5.6990 29 1 1.7931 -2.6367 -2.2036 30 1 1.7184 -2.6858 -0.4256 31 1 0.3438 -2.0448 -1.3571 32 1 -0.3568 -0.6910 -2.8187 33 1 -0.2833 0.9707 -4.8499 34 1 2.0956 2.1774 -4.8383 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308642777.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:16 Heat of formation + Delta-G solvation = 52.389873 kcal Electronic energy + Delta-G solvation = -15220.156231 eV Core-core repulsion = 12767.774528 eV Total energy + Delta-G solvation = -2452.381703 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.17045 -38.80989 -35.64006 -34.00735 -31.12293 -30.96244 -29.73628 -28.23001 -25.82738 -23.99672 -22.15322 -21.75652 -20.56107 -18.71804 -17.90427 -16.94229 -16.61459 -16.34732 -15.65264 -15.24414 -14.72406 -14.49467 -14.27610 -13.71645 -13.66038 -13.55888 -13.07824 -13.04006 -12.94756 -12.74006 -12.43378 -12.16257 -11.86896 -11.85913 -11.55562 -11.29822 -10.69751 -10.34379 -9.49018 -9.27120 -8.25118 -6.36960 1.03402 1.41132 1.41647 1.55271 1.58192 2.01079 2.38818 3.08984 3.40660 3.55258 3.71963 4.00142 4.03468 4.12929 4.34851 4.47805 4.71803 4.75626 4.80804 4.85625 4.91136 4.96633 5.08770 5.15690 5.19737 5.23602 5.36236 5.58855 5.81439 5.96695 6.18879 6.32195 6.62564 6.84015 6.84799 7.34515 8.87176 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.055187 B = 0.005450 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.239851 B = 5136.466913 C = 5272.211847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.076 3.924 3 H 0.003 0.997 4 N -0.664 5.664 5 C 0.211 3.789 6 C -0.533 4.533 7 H 0.071 0.929 8 C -0.001 4.001 9 N -0.938 5.938 10 Si 0.976 3.024 11 H -0.258 1.258 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.165 3.835 15 H 0.086 0.914 16 C -0.147 4.147 17 N -0.369 5.369 18 C 0.057 3.943 19 C -0.285 4.285 20 C 0.035 3.965 21 N -0.353 5.353 22 H 0.032 0.968 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.336 0.664 26 H -0.049 1.049 27 H 0.002 0.998 28 H 0.265 0.735 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.199 0.801 33 H 0.173 0.827 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 -5.644 -16.088 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.035 4.035 3 H 0.021 0.979 4 N -0.295 5.295 5 C 0.083 3.917 6 C -0.571 4.571 7 H 0.089 0.911 8 C -0.199 4.199 9 N -0.578 5.578 10 Si 0.801 3.199 11 H -0.182 1.182 12 H -0.206 1.206 13 H -0.204 1.204 14 C 0.062 3.938 15 H 0.104 0.896 16 C -0.205 4.205 17 N -0.152 5.152 18 C -0.089 4.089 19 C -0.314 4.314 20 C -0.150 4.150 21 N -0.174 5.174 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.154 0.846 26 H -0.031 1.031 27 H 0.020 0.980 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.216 0.784 33 H 0.190 0.810 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.175 -5.781 -15.048 16.652 hybrid contribution 0.445 0.919 0.387 1.092 sum -3.730 -4.861 -14.661 15.890 Atomic orbital electron populations 1.21832 0.93322 1.03263 1.00708 1.21797 0.97600 0.94404 0.89732 0.97890 1.60716 1.32688 1.33151 1.02976 1.19228 0.93971 0.89844 0.88610 1.21565 1.43533 0.97211 0.94760 0.91070 1.26008 0.95562 0.95719 1.02615 1.70122 1.49823 1.10890 1.26954 0.85227 0.77712 0.78974 0.78030 1.18186 1.20578 1.20410 1.21361 1.00515 0.91779 0.80153 0.89590 1.22129 1.02544 0.91787 1.04066 1.48907 1.11696 1.32065 1.22537 1.23063 0.90771 1.01108 0.94001 1.21870 1.00598 1.04678 1.04290 1.24420 0.93970 1.00210 0.96442 1.77337 1.21099 1.08171 1.10804 0.94842 0.91608 0.89573 0.84615 1.03125 0.98003 0.92645 0.90837 0.89037 0.89835 0.78410 0.80975 0.77854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 8.57 71.98 0.62 -3.61 16 2 C 0.08 2.73 2.60 44.91 0.12 2.85 16 3 H 0.00 0.13 7.80 -2.38 -0.02 0.11 16 4 N -0.66 -27.62 5.75 -495.55 -2.85 -30.47 16 5 C 0.21 11.45 5.24 85.56 0.45 11.89 16 6 C -0.53 -30.18 9.32 25.60 0.24 -29.94 16 7 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 8 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 9 N -0.94 -57.47 13.29 21.45 0.28 -57.19 16 10 Si 0.98 44.14 29.54 68.60 2.03 46.17 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 14 C 0.16 4.71 3.09 44.99 0.14 4.85 16 15 H 0.09 2.62 8.02 -2.39 -0.02 2.60 16 16 C -0.15 -3.14 8.23 71.98 0.59 -2.55 16 17 N -0.37 -10.51 3.43 -327.49 -1.12 -11.64 16 18 C 0.06 1.26 8.54 83.54 0.71 1.97 16 19 C -0.29 -5.96 10.80 21.99 0.24 -5.72 16 20 C 0.03 0.85 12.03 85.24 1.03 1.88 16 21 N -0.35 -11.25 12.58 -57.02 -0.72 -11.97 16 22 H 0.03 1.23 7.45 -2.39 -0.02 1.22 16 23 H 0.07 1.81 6.20 -2.39 -0.01 1.80 16 24 H 0.09 2.33 6.35 -2.38 -0.02 2.31 16 25 H 0.34 13.14 8.27 -89.70 -0.74 12.40 16 26 H -0.05 -2.95 8.06 -2.38 -0.02 -2.96 16 27 H 0.00 0.11 7.44 -2.39 -0.02 0.09 16 28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 2.06 7.75 -2.38 -0.02 2.04 16 31 H 0.08 1.52 5.36 -2.39 -0.01 1.51 16 32 H 0.20 3.04 7.20 -2.91 -0.02 3.02 16 33 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.20 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -69.54 280.06 2.55 -66.99 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.34 Total: 16.09 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 4.59 Total: -17.98 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -4.41 Total: -111.27 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.54 2.55 -66.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308642777.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.378 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds