Wall clock time and date at job start Mon Mar 30 2020 02:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 C 1.52997 * 109.47317 * 240.00091 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53002 * 109.46817 * 179.97438 * 4 2 1 7 7 N 1.46899 * 109.47254 * 59.99645 * 4 2 1 8 8 C 1.46897 * 111.00355 * 204.99848 * 7 4 2 9 9 C 1.50696 * 109.47624 * 179.97438 * 8 7 4 10 10 H 1.08001 * 119.99752 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00230 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99895 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00022 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46670 * 90.00128 * 13 11 9 15 15 H 1.48499 * 109.47157 * 210.00018 * 13 11 9 16 16 H 1.48494 * 109.46908 * 330.00175 * 13 11 9 17 17 N 1.46500 * 109.46944 * 119.99651 * 2 1 3 18 18 C 1.34944 * 126.03669 * 34.72323 * 17 2 1 19 19 C 1.35323 * 107.74482 * 179.83861 * 18 17 2 20 20 C 1.39873 * 107.91958 * 0.41777 * 19 18 17 21 21 N 1.30842 * 108.20046 * 359.74273 * 20 19 18 22 22 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47486 * 299.99918 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00641 * 1 2 3 25 25 H 1.08996 * 109.47407 * 60.00219 * 6 4 2 26 26 H 1.09000 * 109.46986 * 179.97438 * 6 4 2 27 27 H 1.09002 * 109.47075 * 299.99262 * 6 4 2 28 28 H 1.00898 * 111.00393 * 328.95803 * 7 4 2 29 29 H 1.09006 * 109.46948 * 300.00869 * 8 7 4 30 30 H 1.09006 * 109.47033 * 59.99701 * 8 7 4 31 31 H 0.97003 * 120.00066 * 179.97438 * 12 11 9 32 32 H 1.07999 * 126.13049 * 359.97438 * 18 17 2 33 33 H 1.08003 * 126.04072 * 180.16194 * 19 18 17 34 34 H 1.07999 * 125.90008 * 179.71671 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6768 -1.7489 -1.2492 6 6 3.5701 -0.7206 -1.2494 7 7 1.5503 -0.0288 -2.4487 8 6 1.4876 -0.9438 -3.5961 9 6 0.9816 -0.1998 -4.8050 10 1 0.7319 0.8482 -4.7286 11 6 0.8373 -0.8569 -6.0084 12 7 1.1408 -2.1331 -6.1013 13 14 0.2106 0.0656 -7.5071 14 1 1.3596 0.6476 -8.2461 15 1 -0.5246 -0.8718 -8.3936 16 1 -0.7012 1.1541 -7.0727 17 7 2.0183 -0.6905 1.1962 18 6 1.4373 -1.7525 1.7926 19 6 2.1966 -2.0927 2.8598 20 6 3.2735 -1.2023 2.9231 21 7 3.1676 -0.3613 1.9264 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 3.9338 -1.2342 -0.3595 26 1 3.9335 -1.2348 -2.1392 27 1 3.9330 0.3072 -1.2497 28 1 0.6527 0.3992 -2.2780 29 1 2.4831 -1.3376 -3.8017 30 1 0.8113 -1.7675 -3.3675 31 1 1.0390 -2.5956 -6.9479 32 1 0.5301 -2.2444 1.4739 33 1 2.0029 -2.9053 3.5444 34 1 4.0568 -1.2077 3.6666 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308642780.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:20 Heat of formation + Delta-G solvation = 74.652572 kcal Electronic energy + Delta-G solvation = -15219.650700 eV Core-core repulsion = 12768.234380 eV Total energy + Delta-G solvation = -2451.416320 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11612 -37.34155 -33.80151 -32.23875 -30.10694 -29.33974 -29.28794 -26.07498 -23.97515 -22.24133 -21.03225 -20.70190 -19.43882 -17.15982 -16.59860 -15.50086 -14.92160 -14.53017 -14.20071 -13.78521 -13.43380 -13.31737 -12.72564 -12.59872 -12.33140 -12.30735 -11.60528 -11.48335 -11.35084 -11.01394 -10.84137 -10.68162 -10.54308 -10.42904 -9.99763 -9.29415 -9.18776 -8.53494 -8.45555 -7.43729 -6.08166 -4.10774 2.04228 2.61164 2.95293 3.29371 3.35347 3.38494 4.38670 4.55878 4.86708 4.89975 5.06278 5.14943 5.18806 5.28200 5.51548 5.64413 5.70739 5.81029 5.89153 5.97955 6.08948 6.11820 6.34109 6.46100 6.74046 6.76950 7.14007 7.20007 7.32582 7.71394 7.85613 8.05595 8.27824 8.50395 8.98018 9.54508 11.02901 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.058783 B = 0.005436 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.210005 B = 5150.013133 C = 5239.909462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.154 3.846 3 H 0.108 0.892 4 C 0.076 3.924 5 H 0.039 0.961 6 C -0.131 4.131 7 N -0.681 5.681 8 C 0.196 3.804 9 C -0.516 4.516 10 H 0.063 0.937 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.900 3.100 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 N -0.353 5.353 18 C 0.056 3.944 19 C -0.283 4.283 20 C 0.034 3.966 21 N -0.292 5.292 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.090 0.910 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.328 0.672 29 H 0.030 0.970 30 H -0.013 1.013 31 H 0.262 0.738 32 H 0.168 0.832 33 H 0.142 0.858 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 0.848 15.176 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.052 3.948 3 H 0.126 0.874 4 C -0.035 4.035 5 H 0.057 0.943 6 C -0.189 4.189 7 N -0.314 5.314 8 C 0.070 3.930 9 C -0.555 4.555 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.728 3.272 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 N -0.135 5.135 18 C -0.092 4.092 19 C -0.313 4.313 20 C -0.151 4.151 21 N -0.113 5.113 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.048 0.952 30 H 0.005 0.995 31 H 0.072 0.928 32 H 0.186 0.814 33 H 0.160 0.840 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.404 2.029 14.145 14.296 hybrid contribution -1.446 -1.041 -0.263 1.801 sum -1.042 0.988 13.882 13.956 Atomic orbital electron populations 1.22251 0.93196 1.03408 1.03792 1.21555 0.94204 0.97671 0.81357 0.87410 1.21817 0.96843 0.95794 0.89083 0.94313 1.21695 0.94320 1.02113 1.00797 1.60844 1.32614 1.34794 1.03193 1.19604 0.96691 0.90070 0.86653 1.21157 1.43569 0.96756 0.94017 0.91898 1.24986 0.95583 0.94885 0.99030 1.69961 1.48682 1.09013 1.25978 0.86468 0.78910 0.79443 0.82404 1.20562 1.21286 1.19820 1.48880 1.18756 1.23869 1.21989 1.22493 0.99936 0.91503 0.95220 1.21435 0.99581 1.06647 1.03618 1.23822 0.99376 0.94442 0.97506 1.77380 1.02929 1.23897 1.07140 0.91646 0.91566 0.89120 0.93406 0.92370 0.92273 0.85229 0.95203 0.99544 0.92841 0.81441 0.83979 0.80473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 8.59 37.16 0.32 -1.71 16 2 C 0.15 2.25 3.04 -67.93 -0.21 2.04 16 3 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 4 C 0.08 1.35 2.42 -67.71 -0.16 1.18 16 5 H 0.04 0.74 7.80 -51.93 -0.40 0.33 16 6 C -0.13 -2.39 9.23 37.16 0.34 -2.05 16 7 N -0.68 -14.06 6.30 -107.99 -0.68 -14.74 16 8 C 0.20 5.05 5.24 -4.98 -0.03 5.02 16 9 C -0.52 -14.38 9.32 -34.44 -0.32 -14.70 16 10 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 13 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 N -0.35 -5.13 2.89 -54.86 -0.16 -5.29 16 18 C 0.06 0.71 10.59 -17.22 -0.18 0.52 16 19 C -0.28 -3.36 10.80 -40.01 -0.43 -3.79 16 20 C 0.03 0.43 12.03 -17.36 -0.21 0.22 16 21 N -0.29 -4.48 11.91 30.63 0.36 -4.12 16 22 H 0.06 0.75 7.15 -51.93 -0.37 0.38 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 1.10 6.21 -51.93 -0.32 0.78 16 25 H 0.05 0.84 7.04 -51.93 -0.37 0.47 16 26 H 0.06 1.14 7.45 -51.93 -0.39 0.76 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.33 6.22 6.16 -39.29 -0.24 5.97 16 29 H 0.03 0.84 7.44 -51.93 -0.39 0.45 16 30 H -0.01 -0.36 8.06 -51.93 -0.42 -0.78 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.17 1.71 7.25 -52.49 -0.38 1.33 16 33 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.18 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 283.17 15.07 4.27 4.27 Total: -1.00 -30.93 283.17 -6.40 -37.34 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.94 Total: 3.72 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -0.98 Total: -11.74 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.26 Total: -49.99 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.93 -6.40 -37.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308642780.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.990 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds