Wall clock time and date at job start Mon Mar 30 2020 02:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 C 1.52997 * 109.47317 * 240.00091 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53002 * 109.46817 * 179.97438 * 4 2 1 7 7 N 1.46899 * 109.47254 * 59.99645 * 4 2 1 8 8 C 1.46897 * 111.00355 * 204.99848 * 7 4 2 9 9 C 1.50696 * 109.47624 * 179.97438 * 8 7 4 10 10 H 1.08001 * 119.99752 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00230 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99895 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00022 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46670 * 90.00128 * 13 11 9 15 15 H 1.48499 * 109.47157 * 210.00018 * 13 11 9 16 16 H 1.48494 * 109.46908 * 330.00175 * 13 11 9 17 17 N 1.46500 * 109.46944 * 119.99651 * 2 1 3 18 18 C 1.34944 * 126.03669 * 34.72323 * 17 2 1 19 19 C 1.35323 * 107.74482 * 179.83861 * 18 17 2 20 20 C 1.39873 * 107.91958 * 0.41777 * 19 18 17 21 21 N 1.30842 * 108.20046 * 359.74273 * 20 19 18 22 22 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47486 * 299.99918 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00641 * 1 2 3 25 25 H 1.08996 * 109.47407 * 60.00219 * 6 4 2 26 26 H 1.09000 * 109.46986 * 179.97438 * 6 4 2 27 27 H 1.09002 * 109.47075 * 299.99262 * 6 4 2 28 28 H 1.00898 * 111.00393 * 328.95803 * 7 4 2 29 29 H 1.09006 * 109.46948 * 300.00869 * 8 7 4 30 30 H 1.09006 * 109.47033 * 59.99701 * 8 7 4 31 31 H 0.97003 * 120.00066 * 179.97438 * 12 11 9 32 32 H 1.07999 * 126.13049 * 359.97438 * 18 17 2 33 33 H 1.08003 * 126.04072 * 180.16194 * 19 18 17 34 34 H 1.07999 * 125.90008 * 179.71671 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6768 -1.7489 -1.2492 6 6 3.5701 -0.7206 -1.2494 7 7 1.5503 -0.0288 -2.4487 8 6 1.4876 -0.9438 -3.5961 9 6 0.9816 -0.1998 -4.8050 10 1 0.7319 0.8482 -4.7286 11 6 0.8373 -0.8569 -6.0084 12 7 1.1408 -2.1331 -6.1013 13 14 0.2106 0.0656 -7.5071 14 1 1.3596 0.6476 -8.2461 15 1 -0.5246 -0.8718 -8.3936 16 1 -0.7012 1.1541 -7.0727 17 7 2.0183 -0.6905 1.1962 18 6 1.4373 -1.7525 1.7926 19 6 2.1966 -2.0927 2.8598 20 6 3.2735 -1.2023 2.9231 21 7 3.1676 -0.3613 1.9264 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 3.9338 -1.2342 -0.3595 26 1 3.9335 -1.2348 -2.1392 27 1 3.9330 0.3072 -1.2497 28 1 0.6527 0.3992 -2.2780 29 1 2.4831 -1.3376 -3.8017 30 1 0.8113 -1.7675 -3.3675 31 1 1.0390 -2.5956 -6.9479 32 1 0.5301 -2.2444 1.4739 33 1 2.0029 -2.9053 3.5444 34 1 4.0568 -1.2077 3.6666 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308642780.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:20 Heat of formation + Delta-G solvation = 54.002331 kcal Electronic energy + Delta-G solvation = -15220.546161 eV Core-core repulsion = 12768.234380 eV Total energy + Delta-G solvation = -2452.311782 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.13274 -38.78880 -35.54062 -33.99827 -31.41134 -30.66930 -30.36675 -28.03358 -25.20382 -24.03190 -22.30987 -21.88036 -20.63636 -18.72865 -18.09681 -17.14693 -16.61629 -15.89264 -15.49281 -15.08182 -14.79768 -14.38080 -14.31679 -14.13523 -13.76495 -13.47358 -13.30656 -12.95358 -12.83264 -12.63766 -12.46151 -12.28298 -12.08103 -11.82714 -11.55528 -11.30245 -10.67534 -10.33207 -9.47011 -9.22166 -8.23719 -6.35195 1.03499 1.41987 1.43786 1.54329 1.57405 2.02280 2.39767 3.10332 3.39851 3.52793 3.67983 3.97494 4.04591 4.14641 4.34171 4.39019 4.66004 4.69119 4.75968 4.82736 4.88845 4.94030 5.07712 5.11316 5.19074 5.20730 5.25429 5.59979 5.83426 5.99076 6.16681 6.37048 6.67529 6.85917 6.86871 7.36136 8.87990 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.058783 B = 0.005436 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.210005 B = 5150.013133 C = 5239.909462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.165 3.835 3 H 0.103 0.897 4 C 0.079 3.921 5 H 0.026 0.974 6 C -0.122 4.122 7 N -0.677 5.677 8 C 0.213 3.787 9 C -0.535 4.535 10 H 0.068 0.932 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.973 3.027 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.260 1.260 17 N -0.367 5.367 18 C 0.046 3.954 19 C -0.282 4.282 20 C 0.035 3.965 21 N -0.333 5.333 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.341 0.659 29 H -0.003 1.003 30 H -0.036 1.036 31 H 0.265 0.735 32 H 0.189 0.811 33 H 0.169 0.831 34 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 1.475 16.051 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.063 3.937 3 H 0.121 0.879 4 C -0.032 4.032 5 H 0.044 0.956 6 C -0.180 4.180 7 N -0.312 5.312 8 C 0.085 3.915 9 C -0.574 4.574 10 H 0.086 0.914 11 C -0.196 4.196 12 N -0.575 5.575 13 Si 0.798 3.202 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.184 1.184 17 N -0.150 5.150 18 C -0.101 4.101 19 C -0.311 4.311 20 C -0.151 4.151 21 N -0.154 5.154 22 H 0.090 0.910 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.162 0.838 29 H 0.015 0.985 30 H -0.018 1.018 31 H 0.074 0.926 32 H 0.206 0.794 33 H 0.187 0.813 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.531 2.667 15.053 15.296 hybrid contribution -1.093 -1.297 -0.423 1.748 sum -1.624 1.370 14.630 14.783 Atomic orbital electron populations 1.22219 0.91096 1.04094 1.04599 1.21301 0.95689 0.96673 0.80086 0.87916 1.21782 0.96339 0.95383 0.89691 0.95557 1.21589 0.94823 1.01725 0.99849 1.60639 1.33468 1.33829 1.03250 1.19207 0.93964 0.89994 0.88306 1.21532 1.43689 0.97142 0.95002 0.91399 1.25945 0.95559 0.95702 1.02382 1.70094 1.49667 1.10753 1.26973 0.85322 0.78478 0.78307 0.78129 1.20132 1.20772 1.18394 1.48835 1.19206 1.24801 1.22120 1.23014 1.00741 0.90973 0.95324 1.21828 0.98841 1.06869 1.03584 1.24431 1.00006 0.93568 0.97080 1.77344 1.03874 1.25664 1.08557 0.91048 0.89609 0.89327 0.92752 0.94754 0.92317 0.83823 0.98530 1.01822 0.92619 0.79364 0.81321 0.77612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 8.59 71.98 0.62 -3.01 16 2 C 0.17 4.68 3.04 44.99 0.14 4.82 16 3 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 4 C 0.08 2.84 2.42 44.92 0.11 2.95 16 5 H 0.03 1.02 7.80 -2.39 -0.02 1.00 16 6 C -0.12 -4.54 9.23 71.98 0.66 -3.87 16 7 N -0.68 -28.29 6.30 -495.58 -3.12 -31.41 16 8 C 0.21 11.29 5.24 85.56 0.45 11.73 16 9 C -0.54 -30.03 9.32 25.60 0.24 -29.79 16 10 H 0.07 3.66 7.81 -2.91 -0.02 3.64 16 11 C 0.00 0.14 5.46 84.65 0.46 0.60 16 12 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 13 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 17 N -0.37 -10.22 2.89 -327.49 -0.95 -11.17 16 18 C 0.05 1.06 10.59 83.54 0.88 1.95 16 19 C -0.28 -5.96 10.80 21.99 0.24 -5.72 16 20 C 0.03 0.80 12.03 85.24 1.03 1.83 16 21 N -0.33 -9.83 11.91 -57.02 -0.68 -10.50 16 22 H 0.07 1.52 7.15 -2.39 -0.02 1.50 16 23 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.09 2.02 6.21 -2.39 -0.01 2.01 16 25 H 0.05 1.93 7.04 -2.39 -0.02 1.91 16 26 H 0.03 1.40 7.45 -2.39 -0.02 1.38 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.34 12.78 6.16 -89.70 -0.55 12.23 16 29 H 0.00 -0.20 7.44 -2.38 -0.02 -0.22 16 30 H -0.04 -2.03 8.06 -2.38 -0.02 -2.05 16 31 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.19 3.40 7.25 -2.91 -0.02 3.38 16 33 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.21 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -66.69 283.17 2.92 -63.77 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.53 Total: 18.07 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 4.82 Total: -18.53 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -4.46 Total: -109.02 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.69 2.92 -63.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308642780.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.775 kcal (2) G-P(sol) polarization free energy of solvation -66.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds