Wall clock time and date at job start Mon Mar 30 2020 02:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99677 * 2 1 3 5 5 C 1.50702 * 109.47522 * 185.00185 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46895 * 109.47206 * 239.99530 * 2 1 3 14 14 C 1.46900 * 111.00012 * 84.99923 * 13 2 1 15 15 C 1.50706 * 109.47510 * 180.02562 * 14 13 2 16 16 N 1.30502 * 125.64857 * 269.69865 * 15 14 13 17 17 C 1.34122 * 109.25121 * 179.89014 * 16 15 14 18 18 C 1.34668 * 108.02475 * 0.36945 * 17 16 15 19 19 N 1.35040 * 125.65090 * 89.99642 * 15 14 13 20 20 C 1.46508 * 126.39326 * 359.95149 * 19 15 14 21 21 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 22 22 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 23 23 H 1.08994 * 109.47308 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47527 * 64.99784 * 4 2 1 25 25 H 1.09001 * 109.47054 * 304.99874 * 4 2 1 26 26 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 27 27 H 1.00898 * 111.00527 * 208.95764 * 13 2 1 28 28 H 1.08995 * 109.47485 * 300.00201 * 14 13 2 29 29 H 1.09005 * 109.46756 * 60.00060 * 14 13 2 30 30 H 1.08011 * 125.98862 * 180.11320 * 17 16 15 31 31 H 1.08000 * 126.59025 * 179.74727 * 18 17 16 32 32 H 1.08996 * 109.47274 * 90.00002 * 20 19 15 33 33 H 1.09003 * 109.46355 * 209.99404 * 20 19 15 34 34 H 1.08994 * 109.46859 * 329.99299 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5415 -1.1053 2.4104 9 14 3.3015 -2.1085 3.6955 10 1 2.9467 -1.1648 4.7859 11 1 2.0620 -2.6945 3.1251 12 1 4.1574 -3.1935 4.2389 13 7 2.0197 -0.6926 -1.1993 14 6 2.0825 0.2224 -2.3469 15 6 2.5874 -0.5220 -3.5560 16 7 3.8379 -0.6373 -3.9109 17 6 3.9136 -1.3679 -5.0331 18 6 2.6620 -1.7118 -5.3916 19 7 1.8203 -1.1756 -4.4549 20 6 0.3598 -1.2896 -4.4316 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.7517 -1.7714 1.2058 25 1 1.6054 -0.2616 2.1370 26 1 6.0262 -1.5157 3.1436 27 1 2.9173 -1.1206 -1.0286 28 1 1.0871 0.6161 -2.5526 29 1 2.7589 1.0461 -2.1182 30 1 4.8195 -1.6305 -5.5595 31 1 2.3771 -2.2977 -6.2530 32 1 -0.0783 -0.4592 -4.9853 33 1 0.0616 -2.2312 -4.8927 34 1 0.0098 -1.2632 -3.3998 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308654647.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:25 Heat of formation + Delta-G solvation = 55.035292 kcal Electronic energy + Delta-G solvation = -15206.008950 eV Core-core repulsion = 12753.741961 eV Total energy + Delta-G solvation = -2452.266989 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.82335 -36.75659 -33.81762 -32.84898 -31.52834 -28.74264 -27.88123 -26.89197 -24.75204 -22.45037 -21.15326 -19.67574 -19.32470 -16.95288 -16.74916 -15.68430 -15.15044 -14.56359 -14.31526 -13.94670 -13.68437 -13.10783 -12.81296 -12.58924 -12.54285 -12.33866 -11.93813 -11.79331 -11.51284 -11.12384 -10.74330 -10.45099 -9.75360 -9.68346 -9.50533 -9.39563 -9.19119 -8.52581 -8.21970 -7.79074 -6.02068 -4.01136 2.21426 2.96928 3.32212 3.38936 3.40311 3.44169 4.46966 4.63356 4.78449 4.96051 5.06098 5.13686 5.36787 5.39141 5.45315 5.65804 5.75827 5.84039 5.98588 6.05207 6.12550 6.36565 6.48389 6.66680 6.72930 6.96789 7.12528 7.27013 7.36713 7.76186 7.82691 8.13796 8.39189 8.52203 9.01047 9.59631 11.10916 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.031770 B = 0.007059 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.127512 B = 3965.655170 C = 4504.862395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 H 0.039 0.961 4 C -0.016 4.016 5 C -0.526 4.526 6 H 0.072 0.928 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.880 3.120 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.289 1.289 13 N -0.681 5.681 14 C 0.141 3.859 15 C 0.223 3.777 16 N -0.486 5.486 17 C -0.028 4.028 18 C -0.070 4.070 19 N -0.452 5.452 20 C 0.073 3.927 21 H 0.050 0.950 22 H 0.039 0.961 23 H 0.054 0.946 24 H 0.025 0.975 25 H 0.018 0.982 26 H 0.263 0.737 27 H 0.367 0.633 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.609 -0.159 -13.184 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.014 4.014 3 H 0.057 0.943 4 C -0.053 4.053 5 C -0.564 4.564 6 H 0.090 0.910 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.707 3.293 10 H -0.204 1.204 11 H -0.189 1.189 12 H -0.215 1.215 13 N -0.317 5.317 14 C 0.010 3.990 15 C -0.040 4.040 16 N -0.205 5.205 17 C -0.177 4.177 18 C -0.203 4.203 19 N -0.135 5.135 20 C -0.070 4.070 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.189 0.811 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.184 0.816 31 H 0.187 0.813 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.556 -0.136 -12.821 17.261 hybrid contribution -0.216 -0.450 0.407 0.644 sum -11.772 -0.586 -12.413 17.118 Atomic orbital electron populations 1.21849 0.96610 1.01317 0.99867 1.21423 0.93109 0.96357 0.90493 0.94265 1.19759 0.97135 0.96166 0.92272 1.21100 0.89812 1.35490 1.09952 0.91014 1.25011 0.94678 0.95668 0.97871 1.69928 1.06535 1.44995 1.32281 0.86778 0.80283 0.79918 0.82271 1.20417 1.18948 1.21467 1.60673 1.36038 1.31256 1.03768 1.20215 0.99516 0.93154 0.86106 1.23302 0.86100 0.99815 0.94768 1.70318 1.17570 1.19163 1.13404 1.22276 0.96603 1.02431 0.96397 1.22602 0.91133 1.07930 0.98606 1.45240 1.07730 1.39892 1.20657 1.22028 0.77076 1.02850 1.05066 0.93060 0.94219 0.92672 0.95718 0.96392 0.92750 0.81061 0.90580 0.92229 0.81629 0.81282 0.91081 0.90028 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.41 37.16 0.35 -1.82 16 2 C 0.10 1.87 2.59 -67.72 -0.18 1.69 16 3 H 0.04 0.79 7.80 -51.93 -0.40 0.39 16 4 C -0.02 -0.37 3.64 -27.88 -0.10 -0.47 16 5 C -0.53 -14.82 8.67 -34.44 -0.30 -15.12 16 6 H 0.07 2.20 7.73 -52.49 -0.41 1.79 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 9 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 N -0.68 -13.01 6.30 -107.99 -0.68 -13.69 16 14 C 0.14 2.34 5.57 -4.97 -0.03 2.32 16 15 C 0.22 3.80 7.42 -155.41 -1.15 2.65 16 16 N -0.49 -9.26 11.25 -10.81 -0.12 -9.38 16 17 C -0.03 -0.44 11.87 -17.82 -0.21 -0.65 16 18 C -0.07 -0.91 11.58 -16.56 -0.19 -1.10 16 19 N -0.45 -6.23 3.15 -121.28 -0.38 -6.61 16 20 C 0.07 0.68 10.79 59.85 0.65 1.33 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 25 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.37 8.31 7.20 -39.29 -0.28 8.03 16 28 H 0.08 1.05 7.00 -51.93 -0.36 0.69 16 29 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 30 H 0.17 2.11 8.06 -52.48 -0.42 1.68 16 31 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.96 7.66 -51.93 -0.40 0.56 16 LS Contribution 284.55 15.07 4.29 4.29 Total: -1.00 -32.88 284.55 -7.18 -40.06 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.13 Total: 4.58 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.26 Total: -9.24 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.41 Total: -56.88 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.88 -7.18 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308654647.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.095 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds