Wall clock time and date at job start Mon Mar 30 2020 02:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99677 * 2 1 3 5 5 C 1.50702 * 109.47522 * 185.00185 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46895 * 109.47206 * 239.99530 * 2 1 3 14 14 C 1.46900 * 111.00012 * 84.99923 * 13 2 1 15 15 C 1.50706 * 109.47510 * 180.02562 * 14 13 2 16 16 N 1.30502 * 125.64857 * 269.69865 * 15 14 13 17 17 C 1.34122 * 109.25121 * 179.89014 * 16 15 14 18 18 C 1.34668 * 108.02475 * 0.36945 * 17 16 15 19 19 N 1.35040 * 125.65090 * 89.99642 * 15 14 13 20 20 C 1.46508 * 126.39326 * 359.95149 * 19 15 14 21 21 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 22 22 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 23 23 H 1.08994 * 109.47308 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47527 * 64.99784 * 4 2 1 25 25 H 1.09001 * 109.47054 * 304.99874 * 4 2 1 26 26 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 27 27 H 1.00898 * 111.00527 * 208.95764 * 13 2 1 28 28 H 1.08995 * 109.47485 * 300.00201 * 14 13 2 29 29 H 1.09005 * 109.46756 * 60.00060 * 14 13 2 30 30 H 1.08011 * 125.98862 * 180.11320 * 17 16 15 31 31 H 1.08000 * 126.59025 * 179.74727 * 18 17 16 32 32 H 1.08996 * 109.47274 * 90.00002 * 20 19 15 33 33 H 1.09003 * 109.46355 * 209.99404 * 20 19 15 34 34 H 1.08994 * 109.46859 * 329.99299 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5415 -1.1053 2.4104 9 14 3.3015 -2.1085 3.6955 10 1 2.9467 -1.1648 4.7859 11 1 2.0620 -2.6945 3.1251 12 1 4.1574 -3.1935 4.2389 13 7 2.0197 -0.6926 -1.1993 14 6 2.0825 0.2224 -2.3469 15 6 2.5874 -0.5220 -3.5560 16 7 3.8379 -0.6373 -3.9109 17 6 3.9136 -1.3679 -5.0331 18 6 2.6620 -1.7118 -5.3916 19 7 1.8203 -1.1756 -4.4549 20 6 0.3598 -1.2896 -4.4316 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.7517 -1.7714 1.2058 25 1 1.6054 -0.2616 2.1370 26 1 6.0262 -1.5157 3.1436 27 1 2.9173 -1.1206 -1.0286 28 1 1.0871 0.6161 -2.5526 29 1 2.7589 1.0461 -2.1182 30 1 4.8195 -1.6305 -5.5595 31 1 2.3771 -2.2977 -6.2530 32 1 -0.0783 -0.4592 -4.9853 33 1 0.0616 -2.2312 -4.8927 34 1 0.0098 -1.2632 -3.3998 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308654647.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:25 Heat of formation + Delta-G solvation = 31.552344 kcal Electronic energy + Delta-G solvation = -15207.027247 eV Core-core repulsion = 12753.741961 eV Total energy + Delta-G solvation = -2453.285286 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.94991 -38.31631 -34.93640 -34.79455 -33.14976 -30.17986 -29.50835 -27.80121 -26.11026 -24.35553 -22.24828 -21.14586 -20.65852 -18.96731 -18.01045 -16.86267 -16.56094 -16.33946 -15.77548 -15.29196 -14.92052 -14.59923 -14.21902 -13.77119 -13.70642 -13.62630 -13.40811 -13.32403 -13.08466 -12.57878 -12.39809 -12.19958 -11.72669 -11.32129 -11.23404 -10.88674 -10.76241 -10.50357 -9.45656 -9.22100 -8.27348 -6.31642 1.10877 1.35932 1.38808 1.50686 1.99388 2.17557 2.37237 3.06194 3.37380 3.71652 3.92439 4.06414 4.22103 4.39035 4.47568 4.48535 4.57956 4.64206 4.70516 4.77687 4.85595 5.04818 5.14422 5.21412 5.33649 5.40342 5.51892 5.68673 5.88580 6.19184 6.24315 6.35045 6.40080 6.75910 7.23144 7.32696 8.89454 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.031770 B = 0.007059 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.127512 B = 3965.655170 C = 4504.862395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.096 3.904 3 H 0.025 0.975 4 C -0.012 4.012 5 C -0.527 4.527 6 H 0.027 0.973 7 C 0.003 3.997 8 N -0.952 5.952 9 Si 0.954 3.046 10 H -0.266 1.266 11 H -0.245 1.245 12 H -0.288 1.288 13 N -0.675 5.675 14 C 0.148 3.852 15 C 0.194 3.806 16 N -0.541 5.541 17 C -0.067 4.067 18 C -0.043 4.043 19 N -0.447 5.447 20 C 0.065 3.935 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.024 0.976 25 H 0.028 0.972 26 H 0.265 0.735 27 H 0.340 0.660 28 H 0.110 0.890 29 H 0.034 0.966 30 H 0.180 0.820 31 H 0.216 0.784 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.039 -1.122 -13.930 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.014 4.014 3 H 0.043 0.957 4 C -0.050 4.050 5 C -0.565 4.565 6 H 0.045 0.955 7 C -0.194 4.194 8 N -0.593 5.593 9 Si 0.777 3.223 10 H -0.191 1.191 11 H -0.168 1.168 12 H -0.214 1.214 13 N -0.308 5.308 14 C 0.018 3.982 15 C -0.069 4.069 16 N -0.261 5.261 17 C -0.214 4.214 18 C -0.177 4.177 19 N -0.129 5.129 20 C -0.076 4.076 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.159 0.841 28 H 0.128 0.872 29 H 0.052 0.948 30 H 0.198 0.802 31 H 0.233 0.767 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.050 -1.077 -13.581 20.301 hybrid contribution 0.905 -0.120 0.499 1.040 sum -14.146 -1.197 -13.082 19.304 Atomic orbital electron populations 1.21744 0.92663 1.02225 1.01885 1.21425 0.96060 0.94841 0.89065 0.95719 1.19714 0.93734 0.96695 0.94827 1.21398 0.92479 1.34191 1.08454 0.95492 1.26039 0.95532 0.96907 1.00889 1.70101 1.08684 1.46858 1.33621 0.85607 0.79277 0.78518 0.78866 1.19057 1.16848 1.21436 1.60790 1.34033 1.31650 1.04324 1.20187 1.00685 0.91972 0.85382 1.23137 0.86318 1.01621 0.95812 1.70204 1.19537 1.20933 1.15454 1.22725 0.98782 1.03552 0.96363 1.23271 0.89989 1.05847 0.98602 1.45490 1.09442 1.38398 1.19565 1.22374 0.74269 1.05410 1.05575 0.91875 0.91468 0.92247 0.95772 0.95378 0.92672 0.84109 0.87186 0.94751 0.80245 0.76692 0.88621 0.87347 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.41 71.98 0.68 -2.90 16 2 C 0.10 3.67 2.59 44.92 0.12 3.79 16 3 H 0.02 1.01 7.80 -2.39 -0.02 0.99 16 4 C -0.01 -0.56 3.64 29.85 0.11 -0.45 16 5 C -0.53 -30.74 8.67 25.60 0.22 -30.52 16 6 H 0.03 1.76 7.73 -2.91 -0.02 1.74 16 7 C 0.00 0.18 5.47 84.65 0.46 0.64 16 8 N -0.95 -61.51 13.96 21.45 0.30 -61.21 16 9 Si 0.95 45.10 27.47 68.60 1.88 46.99 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 N -0.68 -25.96 6.30 -495.58 -3.12 -29.08 16 14 C 0.15 4.96 5.57 85.56 0.48 5.43 16 15 C 0.19 6.62 7.42 138.13 1.02 7.64 16 16 N -0.54 -21.35 11.25 -188.12 -2.12 -23.46 16 17 C -0.07 -2.05 11.87 83.52 0.99 -1.06 16 18 C -0.04 -1.00 11.58 83.09 0.96 -0.04 16 19 N -0.45 -11.29 3.15 -537.60 -1.69 -12.99 16 20 C 0.06 0.96 10.79 127.77 1.38 2.34 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.07 1.53 7.45 -2.39 -0.02 1.51 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 25 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 26 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 27 H 0.34 16.18 7.20 -89.70 -0.65 15.53 16 28 H 0.11 2.83 7.00 -2.39 -0.02 2.81 16 29 H 0.03 1.30 8.06 -2.38 -0.02 1.28 16 30 H 0.18 4.60 8.06 -2.91 -0.02 4.58 16 31 H 0.22 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.49 7.66 -2.39 -0.02 1.48 16 Total: -1.00 -75.49 284.55 2.05 -73.45 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.37 Total: 21.44 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 6.42 Total: -15.13 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -6.63 Total: -126.74 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -75.49 2.05 -73.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308654647.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.999 kcal (2) G-P(sol) polarization free energy of solvation -75.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds