Wall clock time and date at job start Mon Mar 30 2020 02:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 5 5 H 1.08005 * 119.99735 * 240.00290 * 4 2 1 6 6 C 1.37879 * 120.00295 * 60.00270 * 4 2 1 7 7 N 1.31514 * 119.99693 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00152 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47124 * 119.99693 * 8 6 4 11 11 H 1.48501 * 109.46777 * 239.99619 * 8 6 4 12 12 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 13 13 C 1.46901 * 110.99870 * 274.99984 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 C 1.34668 * 125.98823 * 125.00182 * 15 14 13 17 17 N 1.36879 * 106.81742 * 179.97438 * 16 15 14 18 18 C 1.46500 * 126.39656 * 180.02562 * 17 16 15 19 19 C 1.35048 * 107.20347 * 359.97438 * 17 16 15 20 20 N 1.30497 * 108.70056 * 359.77330 * 19 17 16 21 21 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 22 22 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 24 24 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 25 25 H 1.00901 * 110.99869 * 151.04696 * 12 2 1 26 26 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 27 27 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 28 28 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 29 29 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 30 30 H 1.07999 * 126.58846 * 359.93350 * 16 15 14 31 31 H 1.09002 * 109.47305 * 89.99716 * 18 17 16 32 32 H 1.09004 * 109.46896 * 209.99542 * 18 17 16 33 33 H 1.08992 * 109.47110 * 329.99092 * 18 17 16 34 34 H 1.07998 * 125.64567 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6037 10 1 1.1661 -1.5869 -4.8159 11 1 3.1466 -0.1875 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5962 -0.5328 3.5742 15 6 2.6612 0.4062 4.7512 16 6 2.0702 0.2188 5.9466 17 7 2.3843 1.3048 6.7183 18 6 1.9618 1.5400 8.1012 19 6 3.1574 2.1184 5.9672 20 7 3.3230 1.5720 4.7937 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 0.7090 1.1613 -3.4844 25 1 2.9173 -1.1205 1.0288 26 1 2.7589 1.0462 2.1182 27 1 1.0871 0.6164 2.5525 28 1 1.9201 -1.3565 3.8030 29 1 3.5917 -0.9261 3.3683 30 1 1.4643 -0.6258 6.2398 31 1 2.6976 1.1141 8.7834 32 1 1.8797 2.6124 8.2786 33 1 0.9938 1.0686 8.2705 34 1 3.5733 3.0626 6.2863 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313265080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:50 Heat of formation + Delta-G solvation = 55.558767 kcal Electronic energy + Delta-G solvation = -14687.281719 eV Core-core repulsion = 12235.037429 eV Total energy + Delta-G solvation = -2452.244290 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.97470 -36.12666 -34.35024 -32.80513 -31.03705 -28.95836 -27.49348 -25.90248 -25.01638 -22.14623 -21.11952 -19.78259 -19.56848 -17.02129 -16.30195 -15.72872 -14.90383 -14.67538 -14.22397 -13.73051 -13.68744 -13.33995 -12.96786 -12.85668 -12.37764 -11.94934 -11.63383 -11.07222 -10.89706 -10.61643 -10.57815 -10.12625 -10.01106 -9.91003 -9.64693 -9.47186 -8.69681 -8.38174 -8.24026 -7.09378 -5.93033 -3.98895 2.08023 2.76244 3.25685 3.35222 3.42455 3.47326 4.46348 4.48930 4.66825 4.82225 4.87443 5.06438 5.26068 5.38710 5.46735 5.86211 5.92675 6.11953 6.18932 6.28758 6.70646 6.78890 6.87969 7.02191 7.21842 7.27040 7.37116 7.64506 7.88764 8.03165 8.20806 8.39008 8.53800 8.82534 9.13550 9.66585 11.13512 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.068427 B = 0.004522 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.098530 B = 6190.374730 C = 6241.051826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.210 3.790 3 H 0.001 0.999 4 C -0.515 4.515 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.692 5.692 13 C 0.071 3.929 14 C -0.033 4.033 15 C 0.018 3.982 16 C -0.063 4.063 17 N -0.470 5.470 18 C 0.076 3.924 19 C 0.175 3.825 20 N -0.485 5.485 21 H 0.079 0.921 22 H 0.030 0.970 23 H 0.003 0.997 24 H 0.259 0.741 25 H 0.329 0.671 26 H 0.026 0.974 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.173 0.827 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 1.064 20.125 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.102 3.898 3 H 0.018 0.982 4 C -0.553 4.553 5 H 0.078 0.922 6 C -0.142 4.142 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.323 5.323 13 C -0.059 4.059 14 C -0.072 4.072 15 C -0.111 4.111 16 C -0.195 4.195 17 N -0.154 5.154 18 C -0.067 4.067 19 C -0.107 4.107 20 N -0.203 5.203 21 H 0.098 0.902 22 H 0.049 0.951 23 H 0.022 0.978 24 H 0.069 0.931 25 H 0.145 0.855 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.190 0.810 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.365 1.291 19.653 19.743 hybrid contribution 0.516 -0.061 -0.255 0.579 sum 1.881 1.230 19.398 19.528 Atomic orbital electron populations 1.21698 0.98031 0.99172 0.99225 1.19095 0.92538 0.92435 0.85702 0.98164 1.21338 1.31130 1.12363 0.90513 0.92157 1.24934 0.95155 0.95033 0.99031 1.69921 1.36904 1.22990 1.23192 0.86472 0.78552 0.79615 0.82937 1.19747 1.21054 1.21157 1.60742 1.31921 1.33429 1.06176 1.21740 0.99558 0.94201 0.90412 1.19907 1.01577 0.95119 0.90566 1.20842 0.99810 0.95166 0.95288 1.22486 1.09085 0.94661 0.93250 1.45380 1.39708 1.17692 1.12609 1.21981 1.01473 1.03427 0.79862 1.24985 0.98684 0.98987 0.88033 1.70203 1.22552 1.08745 1.18819 0.90239 0.95057 0.97804 0.93093 0.85453 0.95553 0.92370 0.90398 0.91281 0.81017 0.90809 0.89633 0.89814 0.78147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 9.19 37.16 0.34 -2.91 16 2 C 0.21 5.69 2.60 -68.86 -0.18 5.51 16 3 H 0.00 0.02 7.80 -51.93 -0.40 -0.38 16 4 C -0.51 -14.78 8.59 -34.44 -0.30 -15.07 16 5 H 0.06 1.70 7.62 -52.48 -0.40 1.30 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -26.46 11.32 55.43 0.63 -25.84 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 N -0.69 -15.91 6.30 -107.95 -0.68 -16.59 16 13 C 0.07 1.46 5.45 -3.82 -0.02 1.44 16 14 C -0.03 -0.55 6.04 -27.88 -0.17 -0.71 16 15 C 0.02 0.29 6.35 -82.85 -0.53 -0.23 16 16 C -0.06 -0.80 11.46 -16.56 -0.19 -0.99 16 17 N -0.47 -4.97 3.15 -126.00 -0.40 -5.37 16 18 C 0.08 0.41 11.18 59.85 0.67 1.07 16 19 C 0.18 2.16 12.56 -90.37 -1.14 1.02 16 20 N -0.48 -8.07 11.24 -10.87 -0.12 -8.20 16 21 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.33 7.33 8.22 -39.29 -0.32 7.01 16 26 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 27 H 0.06 1.24 7.44 -51.93 -0.39 0.86 16 28 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 287.51 15.07 4.33 4.33 Total: -1.00 -33.61 287.51 -8.01 -41.62 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.15 Total: 2.39 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.60 Total: -9.25 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.57 Total: -55.99 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.61 -8.01 -41.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313265080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.181 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds