Wall clock time and date at job start Mon Mar 30 2020 02:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 5 5 H 1.08005 * 119.99735 * 240.00290 * 4 2 1 6 6 C 1.37879 * 120.00295 * 60.00270 * 4 2 1 7 7 N 1.31514 * 119.99693 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00152 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47124 * 119.99693 * 8 6 4 11 11 H 1.48501 * 109.46777 * 239.99619 * 8 6 4 12 12 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 13 13 C 1.46901 * 110.99870 * 274.99984 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 C 1.34668 * 125.98823 * 125.00182 * 15 14 13 17 17 N 1.36879 * 106.81742 * 179.97438 * 16 15 14 18 18 C 1.46500 * 126.39656 * 180.02562 * 17 16 15 19 19 C 1.35048 * 107.20347 * 359.97438 * 17 16 15 20 20 N 1.30497 * 108.70056 * 359.77330 * 19 17 16 21 21 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 22 22 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 24 24 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 25 25 H 1.00901 * 110.99869 * 151.04696 * 12 2 1 26 26 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 27 27 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 28 28 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 29 29 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 30 30 H 1.07999 * 126.58846 * 359.93350 * 16 15 14 31 31 H 1.09002 * 109.47305 * 89.99716 * 18 17 16 32 32 H 1.09004 * 109.46896 * 209.99542 * 18 17 16 33 33 H 1.08992 * 109.47110 * 329.99092 * 18 17 16 34 34 H 1.07998 * 125.64567 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6037 10 1 1.1661 -1.5869 -4.8159 11 1 3.1466 -0.1875 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5962 -0.5328 3.5742 15 6 2.6612 0.4062 4.7512 16 6 2.0702 0.2188 5.9466 17 7 2.3843 1.3048 6.7183 18 6 1.9618 1.5400 8.1012 19 6 3.1574 2.1184 5.9672 20 7 3.3230 1.5720 4.7937 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 0.7090 1.1613 -3.4844 25 1 2.9173 -1.1205 1.0288 26 1 2.7589 1.0462 2.1182 27 1 1.0871 0.6164 2.5525 28 1 1.9201 -1.3565 3.8030 29 1 3.5917 -0.9261 3.3683 30 1 1.4643 -0.6258 6.2398 31 1 2.6976 1.1141 8.7834 32 1 1.8797 2.6124 8.2786 33 1 0.9938 1.0686 8.2705 34 1 3.5733 3.0626 6.2863 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313265080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:50 Heat of formation + Delta-G solvation = 33.259054 kcal Electronic energy + Delta-G solvation = -14688.248707 eV Core-core repulsion = 12235.037429 eV Total energy + Delta-G solvation = -2453.211278 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.91416 -37.98847 -35.57403 -34.49260 -32.63929 -30.40438 -28.69850 -27.39804 -26.83181 -23.69304 -22.07939 -21.64421 -20.87321 -18.49921 -17.81014 -16.88529 -16.55337 -16.21402 -15.58314 -15.20720 -14.88408 -14.82486 -14.27400 -13.78938 -13.53443 -13.45549 -13.30218 -12.87538 -12.81198 -12.50456 -12.33060 -12.20461 -11.94761 -11.79862 -10.91082 -10.76160 -10.57278 -10.41748 -9.26020 -9.06935 -8.12370 -6.27397 1.16879 1.43165 1.43627 1.56969 2.04147 2.18954 2.43110 3.15726 3.60191 3.79784 4.04287 4.12948 4.30619 4.42272 4.49708 4.53357 4.75616 4.77055 4.79638 4.88903 5.07153 5.14824 5.21542 5.23380 5.37678 5.49074 5.68171 5.80990 5.89004 6.21516 6.39053 6.47451 6.77347 7.01192 7.23468 7.43071 8.94119 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.068427 B = 0.004522 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.098530 B = 6190.374730 C = 6241.051826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.212 3.788 3 H -0.040 1.040 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.281 1.281 12 N -0.683 5.683 13 C 0.082 3.918 14 C -0.018 4.018 15 C -0.027 4.027 16 C -0.048 4.048 17 N -0.464 5.464 18 C 0.068 3.932 19 C 0.175 3.825 20 N -0.543 5.543 21 H 0.057 0.943 22 H 0.032 0.968 23 H 0.017 0.983 24 H 0.263 0.737 25 H 0.333 0.667 26 H -0.001 1.001 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.201 0.799 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.635 0.285 21.741 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 H -0.022 1.022 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.207 1.207 12 N -0.314 5.314 13 C -0.048 4.048 14 C -0.057 4.057 15 C -0.156 4.156 16 C -0.182 4.182 17 N -0.146 5.146 18 C -0.073 4.073 19 C -0.107 4.107 20 N -0.262 5.262 21 H 0.076 0.924 22 H 0.052 0.948 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.150 0.850 26 H 0.017 0.983 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.218 0.782 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.330 0.512 21.319 21.366 hybrid contribution 0.513 0.257 -0.637 0.857 sum 1.843 0.769 20.682 20.778 Atomic orbital electron populations 1.21513 0.97561 0.99012 0.98786 1.18949 0.92948 0.90532 0.87259 1.02199 1.21637 1.31719 1.12741 0.91509 0.91945 1.25823 0.95136 0.95703 1.02284 1.70054 1.37617 1.24194 1.24150 0.85346 0.78137 0.78539 0.78621 1.18836 1.20326 1.20665 1.60696 1.32083 1.33215 1.05360 1.21662 0.98399 0.93553 0.91178 1.19695 1.01416 0.95325 0.89276 1.20794 1.02575 0.95824 0.96390 1.22836 1.07550 0.95482 0.92298 1.45674 1.38387 1.16407 1.14131 1.22368 1.02607 1.05292 0.77008 1.25583 0.98154 0.99816 0.87175 1.70096 1.24572 1.09941 1.21635 0.92438 0.94845 0.96435 0.92819 0.85037 0.98264 0.93498 0.88750 0.91642 0.78188 0.89103 0.87553 0.88385 0.74848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.94 9.19 71.98 0.66 -5.28 16 2 C 0.21 11.81 2.60 44.17 0.11 11.92 16 3 H -0.04 -2.48 7.80 -2.38 -0.02 -2.50 16 4 C -0.54 -31.27 8.59 25.60 0.22 -31.05 16 5 H 0.06 3.52 7.62 -2.91 -0.02 3.50 16 6 C 0.01 0.54 5.30 84.66 0.45 0.99 16 7 N -0.92 -55.53 11.32 21.45 0.24 -55.29 16 8 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 9 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 N -0.68 -32.02 6.30 -495.43 -3.12 -35.14 16 13 C 0.08 3.47 5.45 86.30 0.47 3.94 16 14 C -0.02 -0.61 6.04 29.85 0.18 -0.43 16 15 C -0.03 -0.85 6.35 41.39 0.26 -0.59 16 16 C -0.05 -1.11 11.46 83.09 0.95 -0.15 16 17 N -0.46 -8.58 3.15 -552.54 -1.74 -10.32 16 18 C 0.07 0.47 11.18 127.77 1.43 1.90 16 19 C 0.18 4.05 12.56 180.26 2.26 6.32 16 20 N -0.54 -18.15 11.24 -188.31 -2.12 -20.26 16 21 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 22 H 0.03 1.72 8.14 -2.39 -0.02 1.71 16 23 H 0.02 0.84 7.45 -2.38 -0.02 0.82 16 24 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.33 15.10 8.22 -89.69 -0.74 14.36 16 26 H 0.00 -0.04 8.06 -2.39 -0.02 -0.06 16 27 H 0.05 2.06 7.44 -2.39 -0.02 2.04 16 28 H 0.09 2.76 8.11 -2.39 -0.02 2.74 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.24 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -74.20 287.51 2.63 -71.57 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.34 Total: 14.86 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 7.01 Total: -12.43 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -6.74 Total: -121.02 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -74.20 2.63 -71.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313265080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.829 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds