Wall clock time and date at job start Mon Mar 30 2020 02:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35041 * 126.39322 * 2 1 4 4 N 1.30503 * 108.69928 * 180.02562 * 3 2 1 5 5 C 1.34124 * 109.25583 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.99348 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46879 * 304.99636 * 6 5 4 8 8 N 1.46902 * 109.47313 * 179.97438 * 7 6 5 9 9 C 1.46901 * 111.00148 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46779 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.46766 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00066 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00007 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00255 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46991 * 60.00119 * 15 13 11 17 17 H 1.48501 * 109.47129 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47147 * 299.99918 * 15 13 11 19 19 C 1.34675 * 108.02139 * 359.97438 * 5 4 3 20 20 H 1.09006 * 109.47289 * 269.95547 * 1 2 3 21 21 H 1.08996 * 109.47327 * 29.95915 * 1 2 3 22 22 H 1.09002 * 109.46825 * 149.95962 * 1 2 3 23 23 H 1.07997 * 125.65385 * 0.05440 * 3 2 1 24 24 H 1.09002 * 109.47034 * 64.99474 * 6 5 4 25 25 H 1.08993 * 109.47516 * 184.99697 * 6 5 4 26 26 H 1.08997 * 109.47603 * 299.99749 * 7 6 5 27 27 H 1.09007 * 109.47118 * 59.99845 * 7 6 5 28 28 H 1.00907 * 110.99847 * 56.04347 * 8 7 6 29 29 H 1.08996 * 109.46873 * 300.00159 * 9 8 7 30 30 H 1.08992 * 109.46664 * 60.00417 * 9 8 7 31 31 H 1.09004 * 109.47140 * 299.99825 * 10 9 8 32 32 H 1.08992 * 109.47472 * 60.00018 * 10 9 8 33 33 H 0.96995 * 120.00382 * 180.02562 * 14 13 11 34 34 H 1.07999 * 126.59056 * 179.74167 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5461 -0.6504 -0.0015 6 6 4.7890 -1.5024 -0.0018 7 6 5.6777 -1.1075 -1.1830 8 7 6.8896 -1.9377 -1.1831 9 6 7.7691 -1.5853 -2.3058 10 6 9.0173 -2.4695 -2.2727 11 6 9.9198 -2.1076 -3.4240 12 1 9.6317 -1.3256 -4.1109 13 6 11.1129 -2.7756 -3.6012 14 7 11.4636 -3.7283 -2.7651 15 14 12.2312 -2.3275 -5.0287 16 1 12.6317 -0.9020 -4.9153 17 1 13.4429 -3.1855 -4.9966 18 1 11.5086 -2.5384 -6.3088 19 6 2.2772 -1.1017 -0.0009 20 1 -0.3634 -0.0008 1.0277 21 1 -0.3634 0.8903 -0.5132 22 1 -0.3633 -0.8897 -0.5145 23 1 1.9333 2.1144 0.0008 24 1 5.3341 -1.3502 0.9298 25 1 4.5100 -2.5522 -0.0921 26 1 5.1327 -1.2597 -2.1146 27 1 5.9568 -0.0577 -1.0927 28 1 6.6557 -2.9191 -1.2007 29 1 7.2389 -1.7409 -3.2453 30 1 8.0623 -0.5389 -2.2229 31 1 9.5477 -2.3143 -1.3331 32 1 8.7238 -3.5158 -2.3556 33 1 12.3031 -4.1980 -2.8895 34 1 1.9613 -2.1345 -0.0053 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313276252.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:27 Heat of formation + Delta-G solvation = 48.251148 kcal Electronic energy + Delta-G solvation = -14213.713120 eV Core-core repulsion = 11761.151948 eV Total energy + Delta-G solvation = -2452.561172 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.13344 -36.28888 -34.42567 -33.03982 -31.53514 -29.42034 -28.01007 -26.35447 -23.97051 -22.06841 -21.20690 -20.55780 -19.77945 -17.14782 -16.22159 -15.93609 -15.31419 -14.70574 -14.45137 -14.19047 -13.83107 -13.40920 -13.11712 -13.00687 -12.82058 -12.37966 -11.79483 -11.53093 -11.12887 -10.83826 -10.75239 -10.48505 -9.93417 -9.85587 -9.64942 -9.27267 -9.07489 -8.40997 -8.27386 -7.65725 -5.92297 -3.94449 1.92737 2.62231 3.08762 3.38996 3.42684 3.45695 4.34626 4.48547 4.52553 4.71356 4.72428 4.91136 4.96315 5.25566 5.42559 5.43564 5.70639 5.77709 5.92404 6.09086 6.33221 6.43516 6.50585 6.59978 6.72029 7.05906 7.10307 7.61458 7.83441 7.94092 8.04430 8.10466 8.19786 8.53098 9.12857 9.68733 11.19242 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.080360 B = 0.003606 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.346290 B = 7763.511656 C = 7913.949231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.468 5.468 3 C 0.177 3.823 4 N -0.484 5.484 5 C 0.015 3.985 6 C -0.033 4.033 7 C 0.069 3.931 8 N -0.693 5.693 9 C 0.067 3.933 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.062 4.062 20 H 0.075 0.925 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.203 0.797 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.017 0.983 27 H 0.074 0.926 28 H 0.333 0.667 29 H 0.013 0.987 30 H 0.058 0.942 31 H 0.026 0.974 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.600 5.734 5.953 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.152 5.152 3 C -0.105 4.105 4 N -0.203 5.203 5 C -0.114 4.114 6 C -0.072 4.072 7 C -0.061 4.061 8 N -0.324 5.324 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.194 4.194 20 H 0.093 0.907 21 H 0.105 0.895 22 H 0.102 0.898 23 H 0.220 0.780 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.036 0.964 27 H 0.093 0.907 28 H 0.150 0.850 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -22.595 6.524 6.432 24.382 hybrid contribution -0.740 -0.649 -1.555 1.840 sum -23.335 5.875 4.877 24.552 Atomic orbital electron populations 1.22005 0.76852 1.04566 1.03405 1.45387 1.07477 1.07156 1.55217 1.25006 0.85566 0.93559 1.06358 1.70195 1.19156 1.11786 1.19137 1.20763 0.94033 0.90624 1.06011 1.19863 0.90689 0.96229 1.00394 1.21800 0.90114 0.99043 0.95127 1.60583 1.15876 1.08068 1.47858 1.22134 0.94568 1.00745 0.88703 1.19070 0.90635 0.94084 0.97439 1.21174 1.03944 1.19189 1.11671 0.92817 1.25004 0.97875 0.95119 0.96404 1.69966 1.23062 1.23542 1.36815 0.86647 0.80046 0.78405 0.82821 1.20216 1.21301 1.20332 1.22488 0.90836 0.92529 1.13582 0.90678 0.89543 0.89775 0.78037 0.89907 0.91139 0.96434 0.90728 0.85013 0.96857 0.92354 0.95608 0.96843 0.92990 0.81030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.18 59.85 0.67 0.98 16 2 N -0.47 -4.24 3.15 -125.99 -0.40 -4.64 16 3 C 0.18 1.89 12.56 -90.37 -1.14 0.76 16 4 N -0.48 -7.12 11.23 -10.88 -0.12 -7.24 16 5 C 0.02 0.21 6.36 -82.85 -0.53 -0.32 16 6 C -0.03 -0.47 6.04 -27.88 -0.17 -0.64 16 7 C 0.07 1.17 5.65 -3.82 -0.02 1.15 16 8 N -0.69 -13.55 6.50 -113.78 -0.74 -14.29 16 9 C 0.07 1.52 5.62 -3.82 -0.02 1.50 16 10 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 11 C -0.52 -15.40 9.11 -34.44 -0.31 -15.72 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.70 13.29 55.43 0.74 -26.97 16 15 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.06 -0.68 11.46 -16.56 -0.19 -0.87 16 20 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 21 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 22 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.33 6.08 8.73 -39.29 -0.34 5.74 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -34.79 294.14 -8.44 -43.23 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -5.38 Total: -0.80 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.95 Total: -11.01 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.52 Total: -53.13 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.79 -8.44 -43.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313276252.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.485 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds