Wall clock time and date at job start Mon Mar 30 2020 02:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35041 * 126.39322 * 2 1 4 4 N 1.30503 * 108.69928 * 180.02562 * 3 2 1 5 5 C 1.34124 * 109.25583 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.99348 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46879 * 304.99636 * 6 5 4 8 8 N 1.46902 * 109.47313 * 179.97438 * 7 6 5 9 9 C 1.46901 * 111.00148 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46779 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.46766 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00066 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00007 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00255 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46991 * 60.00119 * 15 13 11 17 17 H 1.48501 * 109.47129 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47147 * 299.99918 * 15 13 11 19 19 C 1.34675 * 108.02139 * 359.97438 * 5 4 3 20 20 H 1.09006 * 109.47289 * 269.95547 * 1 2 3 21 21 H 1.08996 * 109.47327 * 29.95915 * 1 2 3 22 22 H 1.09002 * 109.46825 * 149.95962 * 1 2 3 23 23 H 1.07997 * 125.65385 * 0.05440 * 3 2 1 24 24 H 1.09002 * 109.47034 * 64.99474 * 6 5 4 25 25 H 1.08993 * 109.47516 * 184.99697 * 6 5 4 26 26 H 1.08997 * 109.47603 * 299.99749 * 7 6 5 27 27 H 1.09007 * 109.47118 * 59.99845 * 7 6 5 28 28 H 1.00907 * 110.99847 * 56.04347 * 8 7 6 29 29 H 1.08996 * 109.46873 * 300.00159 * 9 8 7 30 30 H 1.08992 * 109.46664 * 60.00417 * 9 8 7 31 31 H 1.09004 * 109.47140 * 299.99825 * 10 9 8 32 32 H 1.08992 * 109.47472 * 60.00018 * 10 9 8 33 33 H 0.96995 * 120.00382 * 180.02562 * 14 13 11 34 34 H 1.07999 * 126.59056 * 179.74167 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5461 -0.6504 -0.0015 6 6 4.7890 -1.5024 -0.0018 7 6 5.6777 -1.1075 -1.1830 8 7 6.8896 -1.9377 -1.1831 9 6 7.7691 -1.5853 -2.3058 10 6 9.0173 -2.4695 -2.2727 11 6 9.9198 -2.1076 -3.4240 12 1 9.6317 -1.3256 -4.1109 13 6 11.1129 -2.7756 -3.6012 14 7 11.4636 -3.7283 -2.7651 15 14 12.2312 -2.3275 -5.0287 16 1 12.6317 -0.9020 -4.9153 17 1 13.4429 -3.1855 -4.9966 18 1 11.5086 -2.5384 -6.3088 19 6 2.2772 -1.1017 -0.0009 20 1 -0.3634 -0.0008 1.0277 21 1 -0.3634 0.8903 -0.5132 22 1 -0.3633 -0.8897 -0.5145 23 1 1.9333 2.1144 0.0008 24 1 5.3341 -1.3502 0.9298 25 1 4.5100 -2.5522 -0.0921 26 1 5.1327 -1.2597 -2.1146 27 1 5.9568 -0.0577 -1.0927 28 1 6.6557 -2.9191 -1.2007 29 1 7.2389 -1.7409 -3.2453 30 1 8.0623 -0.5389 -2.2229 31 1 9.5477 -2.3143 -1.3331 32 1 8.7238 -3.5158 -2.3556 33 1 12.3031 -4.1980 -2.8895 34 1 1.9613 -2.1345 -0.0053 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313276252.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:27 Heat of formation + Delta-G solvation = 24.978986 kcal Electronic energy + Delta-G solvation = -14214.722276 eV Core-core repulsion = 11761.151948 eV Total energy + Delta-G solvation = -2453.570328 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.92587 -37.86005 -35.58543 -34.80635 -32.98700 -30.91164 -29.10492 -27.31219 -25.83418 -23.39926 -22.50092 -21.99275 -20.80350 -18.50481 -17.82742 -17.06466 -16.50316 -16.41476 -15.67327 -15.39363 -14.93687 -14.86509 -14.31801 -14.17609 -13.81275 -13.46051 -13.22200 -13.12480 -12.95373 -12.70218 -12.39809 -12.17432 -11.82660 -11.41671 -11.28125 -10.78889 -10.55328 -10.42838 -9.30374 -9.26097 -8.19533 -6.31463 1.15785 1.40475 1.44586 1.52495 2.03096 2.17575 2.41623 3.13284 3.36743 3.77185 3.97863 4.12076 4.21241 4.35547 4.43922 4.48575 4.60453 4.61347 4.70562 4.75136 4.81517 5.05225 5.12388 5.22578 5.36784 5.44623 5.67562 5.78723 5.83024 6.13878 6.27083 6.37774 6.59628 6.85092 7.21825 7.37465 8.92615 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.080360 B = 0.003606 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.346290 B = 7763.511656 C = 7913.949231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.464 5.464 3 C 0.176 3.824 4 N -0.539 5.539 5 C -0.027 4.027 6 C -0.022 4.022 7 C 0.079 3.921 8 N -0.697 5.697 9 C 0.084 3.916 10 C 0.033 3.967 11 C -0.549 4.549 12 H 0.059 0.941 13 C 0.001 3.999 14 N -0.931 5.931 15 Si 0.969 3.031 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.266 1.266 19 C -0.050 4.050 20 H 0.089 0.911 21 H 0.106 0.894 22 H 0.097 0.903 23 H 0.235 0.765 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.342 0.658 29 H 0.017 0.983 30 H 0.051 0.949 31 H -0.005 1.005 32 H -0.005 1.005 33 H 0.265 0.735 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.425 6.124 5.176 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.146 5.146 3 C -0.107 4.107 4 N -0.258 5.258 5 C -0.155 4.155 6 C -0.061 4.061 7 C -0.050 4.050 8 N -0.329 5.329 9 C -0.045 4.045 10 C -0.004 4.004 11 C -0.587 4.587 12 H 0.077 0.923 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.793 3.207 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.184 4.184 20 H 0.108 0.892 21 H 0.125 0.875 22 H 0.116 0.884 23 H 0.251 0.749 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.160 0.840 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.013 0.987 32 H 0.014 0.986 33 H 0.074 0.926 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -24.470 6.918 5.665 26.052 hybrid contribution -0.276 -0.761 -1.256 1.494 sum -24.745 6.157 4.409 25.878 Atomic orbital electron populations 1.22365 0.73710 1.06336 1.04918 1.45674 1.09289 1.06113 1.53521 1.25593 0.84882 0.95215 1.04974 1.70098 1.21831 1.12637 1.21272 1.20761 0.94856 0.90725 1.09197 1.19699 0.90631 0.97704 0.98049 1.21719 0.89268 0.97342 0.96711 1.60481 1.17066 1.09063 1.46246 1.21770 0.93487 0.99177 0.90092 1.18913 0.92155 0.93885 0.95486 1.21596 1.04963 1.19701 1.12486 0.92308 1.25997 0.99536 0.94753 0.99451 1.70100 1.23766 1.24506 1.38733 0.85446 0.77735 0.78446 0.79069 1.19259 1.20536 1.19040 1.22845 0.90116 0.94096 1.11340 0.89234 0.87511 0.88409 0.74887 0.91370 0.89012 0.96271 0.92784 0.84036 0.96444 0.93018 0.98697 0.98632 0.92635 0.78326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 11.18 127.77 1.43 1.75 16 2 N -0.46 -7.21 3.15 -552.53 -1.74 -8.95 16 3 C 0.18 3.48 12.56 180.26 2.26 5.74 16 4 N -0.54 -15.76 11.23 -188.32 -2.12 -17.87 16 5 C -0.03 -0.72 6.36 41.39 0.26 -0.46 16 6 C -0.02 -0.63 6.04 29.85 0.18 -0.45 16 7 C 0.08 2.72 5.65 86.30 0.49 3.21 16 8 N -0.70 -27.68 6.50 -513.89 -3.34 -31.02 16 9 C 0.08 3.90 5.62 86.30 0.49 4.39 16 10 C 0.03 1.87 5.23 29.85 0.16 2.03 16 11 C -0.55 -32.88 9.11 25.60 0.23 -32.65 16 12 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 13 C 0.00 0.04 5.46 84.65 0.46 0.50 16 14 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 15 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 19 C -0.05 -0.98 11.46 83.09 0.95 -0.03 16 20 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 21 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 22 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 23 H 0.24 2.60 8.06 -2.91 -0.02 2.58 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.09 2.13 8.11 -2.39 -0.02 2.11 16 26 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.34 12.56 8.73 -89.69 -0.78 11.78 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 31 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 32 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.20 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -76.40 294.14 2.31 -74.09 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.28 Total: 10.26 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 6.91 Total: -15.98 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -6.91 Total: -115.99 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.40 2.31 -74.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313276252.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.067 kcal (2) G-P(sol) polarization free energy of solvation -76.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds