Wall clock time and date at job start Mon Mar 30 2020 03:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53656 * 117.18355 * 2 1 4 4 C 1.52069 * 117.25122 * 291.86485 * 2 1 3 5 5 H 1.09004 * 115.93268 * 1.36963 * 4 2 1 6 6 C 1.52074 * 120.01396 * 216.66157 * 4 2 1 7 7 C 1.52870 * 110.51853 * 338.29766 * 6 4 2 8 8 C 1.53301 * 108.73870 * 54.80064 * 7 6 4 9 9 C 1.52709 * 114.91249 * 141.49800 * 2 1 3 10 10 H 1.09001 * 109.35162 * 247.91683 * 9 2 1 11 11 N 1.46896 * 109.35767 * 7.63498 * 9 2 1 12 12 C 1.46904 * 111.00013 * 205.00257 * 11 9 2 13 13 C 1.52992 * 109.47333 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47505 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99376 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00347 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99780 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99774 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47111 * 90.00257 * 18 16 14 20 20 H 1.48503 * 109.46630 * 210.00057 * 18 16 14 21 21 H 1.48491 * 109.47363 * 329.99669 * 18 16 14 22 22 H 1.09003 * 109.46614 * 128.14528 * 1 2 3 23 23 H 1.09004 * 109.47201 * 248.13373 * 1 2 3 24 24 H 1.08993 * 109.47553 * 8.14309 * 1 2 3 25 25 H 1.09003 * 117.53359 * 145.38135 * 3 2 1 26 26 H 1.08995 * 117.53757 * 0.13027 * 3 2 1 27 27 H 1.09001 * 109.26583 * 218.02984 * 6 4 2 28 28 H 1.08999 * 109.27177 * 98.56726 * 6 4 2 29 29 H 1.09002 * 109.61958 * 174.62322 * 7 6 4 30 30 H 1.08998 * 109.61605 * 294.98355 * 7 6 4 31 31 H 1.08998 * 109.62107 * 45.37734 * 8 7 6 32 32 H 1.09000 * 109.61928 * 165.92391 * 8 7 6 33 33 H 1.00900 * 111.00226 * 81.04699 * 11 9 2 34 34 H 1.09007 * 109.46987 * 300.00231 * 12 11 9 35 35 H 1.08999 * 109.47210 * 59.99615 * 12 11 9 36 36 H 1.09007 * 109.47061 * 299.99927 * 13 12 11 37 37 H 1.08999 * 109.47498 * 59.99533 * 13 12 11 38 38 H 0.97000 * 119.99746 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2320 1.3668 0.0000 4 6 2.2264 0.5035 -1.2547 5 1 1.5734 0.8502 -2.0557 6 6 3.5137 -0.1545 -1.7262 7 6 4.1955 -0.8872 -0.5706 8 6 3.1958 -1.8725 0.0459 9 6 2.1733 -1.0839 0.8622 10 1 2.6761 -0.6195 1.7106 11 7 1.1326 -1.9969 1.3532 12 6 1.5541 -2.6555 2.5969 13 6 0.4472 -3.5967 3.0760 14 6 0.8793 -4.2719 4.3522 15 1 1.8469 -4.0519 4.7785 16 6 0.0394 -5.1704 4.9754 17 7 -1.1390 -5.4378 4.4564 18 14 0.5755 -6.0077 6.5568 19 1 0.1531 -5.1863 7.7196 20 1 -0.0541 -7.3499 6.6442 21 1 2.0532 -6.1528 6.5638 22 1 -0.3633 -0.6348 -0.8082 23 1 -0.3634 -0.3828 0.9538 24 1 -0.3634 1.0172 -0.1456 25 1 3.1698 1.4517 0.5491 26 1 1.6025 2.2566 0.0022 27 1 4.1869 0.6098 -2.1146 28 1 3.2843 -0.8671 -2.5184 29 1 5.0632 -1.4314 -0.9435 30 1 4.5117 -0.1667 0.1837 31 1 2.6842 -2.4187 -0.7465 32 1 3.7237 -2.5719 0.6942 33 1 0.8866 -2.6768 0.6495 34 1 2.4637 -3.2279 2.4147 35 1 1.7461 -1.9015 3.3603 36 1 -0.4626 -3.0247 3.2582 37 1 0.2555 -4.3507 2.3126 38 1 -1.7301 -6.0696 4.8951 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379569807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:34 Heat of formation + Delta-G solvation = -0.697741 kcal Electronic energy + Delta-G solvation = -15550.539749 eV Core-core repulsion = 13199.396338 eV Total energy + Delta-G solvation = -2351.143411 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94096 -35.59960 -33.40357 -32.88119 -30.40200 -27.80811 -27.18498 -24.60561 -23.06343 -22.24287 -20.57558 -20.10454 -17.92434 -16.34416 -15.87980 -14.65237 -14.64522 -14.38006 -14.02393 -13.91306 -13.21567 -12.78974 -12.77453 -12.46132 -11.97879 -11.90127 -11.44820 -11.25660 -11.15521 -11.00126 -10.90295 -10.80653 -10.55222 -10.28797 -9.98182 -9.72459 -9.30845 -9.22621 -9.09526 -8.33124 -7.66915 -5.97859 -4.00208 3.33366 3.39369 3.42529 3.82092 4.43058 4.58050 4.70384 4.82800 5.04313 5.15329 5.22647 5.25146 5.38171 5.43123 5.57277 5.63190 5.73838 5.83145 5.95650 6.06509 6.07699 6.09786 6.16322 6.22769 6.30022 6.31681 6.42665 6.47902 6.58589 6.85728 7.02173 7.55617 7.77196 7.86796 8.01569 8.12210 8.46484 9.07196 9.63476 11.13592 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049067 B = 0.005339 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.511143 B = 5243.302990 C = 5528.246748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.183 4.183 4 C -0.144 4.144 5 H 0.093 0.907 6 C -0.086 4.086 7 C -0.117 4.117 8 C -0.148 4.148 9 C 0.123 3.877 10 H 0.074 0.926 11 N -0.681 5.681 12 C 0.066 3.934 13 C 0.026 3.974 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.275 1.275 22 H 0.050 0.950 23 H 0.090 0.910 24 H 0.039 0.961 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.337 0.663 34 H 0.014 0.986 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.013 0.987 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 10.768 -11.396 17.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.098 4.098 3 C -0.220 4.220 4 C -0.163 4.163 5 H 0.112 0.888 6 C -0.123 4.123 7 C -0.156 4.156 8 C -0.187 4.187 9 C 0.013 3.987 10 H 0.092 0.908 11 N -0.310 5.310 12 C -0.062 4.062 13 C -0.012 4.012 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.200 1.200 22 H 0.069 0.931 23 H 0.109 0.891 24 H 0.058 0.942 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.154 0.846 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.031 0.969 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.206 11.147 -11.017 17.250 hybrid contribution 0.935 -1.088 0.511 1.523 sum 8.141 10.060 -10.506 16.669 Atomic orbital electron populations 1.21272 0.91444 0.99813 1.04090 1.21456 0.95423 0.94606 0.98315 1.23239 1.02431 0.94579 1.01726 1.21919 0.99026 1.03290 0.92022 0.88843 1.20817 0.94873 0.98796 0.97799 1.21539 0.97829 0.98316 0.97866 1.22300 0.97998 0.98364 1.00043 1.20929 0.90160 0.92578 0.95073 0.90770 1.60699 1.39536 1.23282 1.07493 1.22176 0.98235 0.96406 0.89413 1.19060 0.93527 0.93112 0.95490 1.21185 1.02210 1.24189 1.08390 0.92832 1.24996 0.94959 0.96796 0.97582 1.69975 1.08627 1.35048 1.39628 0.86599 0.78709 0.78863 0.83853 1.20637 1.21236 1.19959 0.93127 0.89145 0.94166 0.89237 0.89266 0.92045 0.91772 0.92150 0.92000 0.91693 0.91782 0.84563 0.96723 0.92503 0.95691 0.96868 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.25 37.16 0.34 -1.16 16 2 C -0.10 -1.30 2.55 -154.79 -0.39 -1.69 16 3 C -0.18 -2.15 9.30 -26.75 -0.25 -2.40 16 4 C -0.14 -1.65 5.71 -91.92 -0.52 -2.17 16 5 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 6 C -0.09 -0.89 5.94 -27.27 -0.16 -1.05 16 7 C -0.12 -1.30 5.69 -26.64 -0.15 -1.45 16 8 C -0.15 -1.97 5.16 -26.69 -0.14 -2.11 16 9 C 0.12 1.83 2.39 -67.98 -0.16 1.67 16 10 H 0.07 1.17 7.71 -51.93 -0.40 0.77 16 11 N -0.68 -12.05 4.28 -107.01 -0.46 -12.51 16 12 C 0.07 1.39 5.42 -3.83 -0.02 1.37 16 13 C 0.03 0.67 5.23 -27.89 -0.15 0.52 16 14 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 18 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.09 1.46 6.87 -51.93 -0.36 1.10 16 24 H 0.04 0.50 7.88 -51.93 -0.41 0.09 16 25 H 0.09 1.03 7.27 -51.93 -0.38 0.65 16 26 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.69 7.12 -51.93 -0.37 0.32 16 31 H 0.06 0.87 7.94 -51.93 -0.41 0.46 16 32 H 0.06 0.91 7.55 -51.93 -0.39 0.52 16 33 H 0.34 5.88 8.42 -39.29 -0.33 5.55 16 34 H 0.01 0.30 7.49 -51.93 -0.39 -0.08 16 35 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 297.01 15.07 4.48 4.48 Total: -1.00 -29.20 297.01 -9.06 -38.26 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.77 Total: 1.46 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -2.02 Total: -22.11 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.28 Total: -38.89 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.20 -9.06 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379569807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.562 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds