Wall clock time and date at job start Mon Mar 30 2020 03:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53656 * 117.18355 * 2 1 4 4 C 1.52069 * 117.25122 * 291.86485 * 2 1 3 5 5 H 1.09004 * 115.93268 * 1.36963 * 4 2 1 6 6 C 1.52074 * 120.01396 * 216.66157 * 4 2 1 7 7 C 1.52870 * 110.51853 * 338.29766 * 6 4 2 8 8 C 1.53301 * 108.73870 * 54.80064 * 7 6 4 9 9 C 1.52709 * 114.91249 * 141.49800 * 2 1 3 10 10 H 1.09001 * 109.35162 * 247.91683 * 9 2 1 11 11 N 1.46896 * 109.35767 * 7.63498 * 9 2 1 12 12 C 1.46904 * 111.00013 * 205.00257 * 11 9 2 13 13 C 1.52992 * 109.47333 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47505 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99376 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00347 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99780 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99774 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47111 * 90.00257 * 18 16 14 20 20 H 1.48503 * 109.46630 * 210.00057 * 18 16 14 21 21 H 1.48491 * 109.47363 * 329.99669 * 18 16 14 22 22 H 1.09003 * 109.46614 * 128.14528 * 1 2 3 23 23 H 1.09004 * 109.47201 * 248.13373 * 1 2 3 24 24 H 1.08993 * 109.47553 * 8.14309 * 1 2 3 25 25 H 1.09003 * 117.53359 * 145.38135 * 3 2 1 26 26 H 1.08995 * 117.53757 * 0.13027 * 3 2 1 27 27 H 1.09001 * 109.26583 * 218.02984 * 6 4 2 28 28 H 1.08999 * 109.27177 * 98.56726 * 6 4 2 29 29 H 1.09002 * 109.61958 * 174.62322 * 7 6 4 30 30 H 1.08998 * 109.61605 * 294.98355 * 7 6 4 31 31 H 1.08998 * 109.62107 * 45.37734 * 8 7 6 32 32 H 1.09000 * 109.61928 * 165.92391 * 8 7 6 33 33 H 1.00900 * 111.00226 * 81.04699 * 11 9 2 34 34 H 1.09007 * 109.46987 * 300.00231 * 12 11 9 35 35 H 1.08999 * 109.47210 * 59.99615 * 12 11 9 36 36 H 1.09007 * 109.47061 * 299.99927 * 13 12 11 37 37 H 1.08999 * 109.47498 * 59.99533 * 13 12 11 38 38 H 0.97000 * 119.99746 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2320 1.3668 0.0000 4 6 2.2264 0.5035 -1.2547 5 1 1.5734 0.8502 -2.0557 6 6 3.5137 -0.1545 -1.7262 7 6 4.1955 -0.8872 -0.5706 8 6 3.1958 -1.8725 0.0459 9 6 2.1733 -1.0839 0.8622 10 1 2.6761 -0.6195 1.7106 11 7 1.1326 -1.9969 1.3532 12 6 1.5541 -2.6555 2.5969 13 6 0.4472 -3.5967 3.0760 14 6 0.8793 -4.2719 4.3522 15 1 1.8469 -4.0519 4.7785 16 6 0.0394 -5.1704 4.9754 17 7 -1.1390 -5.4378 4.4564 18 14 0.5755 -6.0077 6.5568 19 1 0.1531 -5.1863 7.7196 20 1 -0.0541 -7.3499 6.6442 21 1 2.0532 -6.1528 6.5638 22 1 -0.3633 -0.6348 -0.8082 23 1 -0.3634 -0.3828 0.9538 24 1 -0.3634 1.0172 -0.1456 25 1 3.1698 1.4517 0.5491 26 1 1.6025 2.2566 0.0022 27 1 4.1869 0.6098 -2.1146 28 1 3.2843 -0.8671 -2.5184 29 1 5.0632 -1.4314 -0.9435 30 1 4.5117 -0.1667 0.1837 31 1 2.6842 -2.4187 -0.7465 32 1 3.7237 -2.5719 0.6942 33 1 0.8866 -2.6768 0.6495 34 1 2.4637 -3.2279 2.4147 35 1 1.7461 -1.9015 3.3603 36 1 -0.4626 -3.0247 3.2582 37 1 0.2555 -4.3507 2.3126 38 1 -1.7301 -6.0696 4.8951 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379569807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:33 Heat of formation + Delta-G solvation = -16.786524 kcal Electronic energy + Delta-G solvation = -15551.237411 eV Core-core repulsion = 13199.396338 eV Total energy + Delta-G solvation = -2351.841073 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98083 -37.12997 -35.03825 -34.26868 -32.08472 -29.32851 -28.25974 -26.29568 -24.40916 -23.34507 -22.44017 -21.08060 -18.99761 -18.49724 -17.04522 -16.46134 -16.05734 -15.82179 -15.10804 -15.03512 -14.58887 -14.28906 -14.05074 -13.85287 -13.44503 -13.21781 -12.93303 -12.83782 -12.49618 -12.44461 -12.30604 -12.10193 -11.93758 -11.72661 -11.45279 -11.30618 -11.24332 -10.56907 -10.53791 -10.24481 -9.11510 -8.20366 -6.31894 1.39989 1.41734 1.52628 2.40413 2.86332 3.13055 3.28913 3.70889 3.88925 4.05361 4.13243 4.21483 4.24279 4.40281 4.42942 4.55600 4.60461 4.68542 4.83697 4.94067 5.01319 5.04258 5.06635 5.09408 5.14922 5.22842 5.26983 5.36554 5.39906 5.45591 5.49968 5.67451 5.69794 5.80673 6.16842 6.33522 6.57877 6.85459 7.37402 8.91826 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049067 B = 0.005339 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.511143 B = 5243.302990 C = 5528.246748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.120 4.120 3 C -0.176 4.176 4 C -0.130 4.130 5 H 0.104 0.896 6 C -0.085 4.085 7 C -0.113 4.113 8 C -0.145 4.145 9 C 0.125 3.875 10 H 0.063 0.937 11 N -0.683 5.683 12 C 0.087 3.913 13 C 0.034 3.966 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.263 1.263 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.337 0.663 34 H 0.017 0.983 35 H 0.053 0.947 36 H -0.007 1.007 37 H -0.009 1.009 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.302 11.527 -11.865 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.121 4.121 3 C -0.213 4.213 4 C -0.148 4.148 5 H 0.122 0.878 6 C -0.122 4.122 7 C -0.151 4.151 8 C -0.184 4.184 9 C 0.015 3.985 10 H 0.081 0.919 11 N -0.312 5.312 12 C -0.042 4.042 13 C -0.004 4.004 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.188 1.188 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.155 0.845 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.012 0.988 37 H 0.009 0.991 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.788 11.925 -11.501 18.754 hybrid contribution 0.411 -1.294 0.620 1.492 sum 9.199 10.631 -10.881 17.777 Atomic orbital electron populations 1.21173 0.92105 1.00464 1.02392 1.21361 0.95033 0.95294 1.00383 1.23308 1.02304 0.93863 1.01833 1.22015 0.99223 1.01977 0.91591 0.87807 1.20858 0.94521 0.99335 0.97478 1.21519 0.97605 0.97856 0.98127 1.22233 0.98031 0.98511 0.99600 1.20955 0.89799 0.92444 0.95308 0.91852 1.60624 1.41027 1.23083 1.06512 1.21756 0.96202 0.95350 0.90901 1.18901 0.93917 0.93001 0.94577 1.21613 1.02620 1.24733 1.09392 0.92306 1.25968 0.94851 0.97425 1.01408 1.70110 1.09879 1.35735 1.41434 0.85424 0.78781 0.77672 0.79021 1.19745 1.20618 1.18758 0.93133 0.92103 0.92740 0.88880 0.88341 0.90042 0.91154 0.90731 0.91940 0.91795 0.93079 0.84519 0.96492 0.92890 0.98810 0.99108 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.83 9.25 71.98 0.67 -2.17 16 2 C -0.12 -3.06 2.55 -52.36 -0.13 -3.19 16 3 C -0.18 -3.73 9.30 30.58 0.28 -3.45 16 4 C -0.13 -2.61 5.71 -11.64 -0.07 -2.68 16 5 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 6 C -0.08 -1.48 5.94 30.25 0.18 -1.30 16 7 C -0.11 -2.23 5.69 30.65 0.17 -2.06 16 8 C -0.14 -3.71 5.16 30.62 0.16 -3.55 16 9 C 0.12 3.67 2.39 44.74 0.11 3.78 16 10 H 0.06 1.99 7.71 -2.39 -0.02 1.97 16 11 N -0.68 -24.80 4.28 -492.47 -2.11 -26.91 16 12 C 0.09 3.76 5.42 86.30 0.47 4.22 16 13 C 0.03 1.83 5.23 29.85 0.16 1.98 16 14 C -0.55 -31.73 9.11 25.60 0.23 -31.50 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.00 0.08 5.46 84.65 0.46 0.55 16 17 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 18 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.06 2.01 6.87 -2.39 -0.02 2.00 16 24 H 0.05 1.29 7.88 -2.39 -0.02 1.27 16 25 H 0.09 1.91 7.27 -2.39 -0.02 1.90 16 26 H 0.10 1.91 8.04 -2.39 -0.02 1.89 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.24 7.12 -2.39 -0.02 1.22 16 31 H 0.06 1.65 7.94 -2.39 -0.02 1.63 16 32 H 0.05 1.42 7.55 -2.39 -0.02 1.41 16 33 H 0.34 12.14 8.42 -89.69 -0.75 11.38 16 34 H 0.02 0.72 7.49 -2.38 -0.02 0.70 16 35 H 0.05 2.32 8.05 -2.39 -0.02 2.30 16 36 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 37 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -63.07 297.01 3.15 -59.92 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.26 Total: 16.86 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 2.69 Total: -39.35 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -1.82 Total: -84.25 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -63.07 3.15 -59.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379569807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.136 kcal (2) G-P(sol) polarization free energy of solvation -63.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds