Wall clock time and date at job start Mon Mar 30 2020 02:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48498 * 109.47202 * 270.00148 * 3 2 1 5 5 H 1.48501 * 109.47603 * 30.00349 * 3 2 1 6 6 H 1.48506 * 109.47086 * 149.99988 * 3 2 1 7 7 C 1.37872 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47473 * 34.99539 * 12 11 10 14 14 C 1.53003 * 109.47021 * 274.99736 * 12 11 10 15 15 C 1.52992 * 109.47200 * 240.00080 * 14 12 11 16 16 C 1.53006 * 109.47088 * 60.00338 * 15 14 12 17 17 C 1.52997 * 109.46755 * 299.99576 * 16 15 14 18 18 C 1.53000 * 109.47187 * 154.99992 * 12 11 10 19 19 C 1.52996 * 109.47267 * 179.97438 * 18 12 11 20 20 C 1.53001 * 109.47433 * 300.00127 * 15 14 12 21 21 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 23 23 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 25 25 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 26 26 H 1.00901 * 110.99869 * 56.04956 * 11 10 9 27 27 H 1.09004 * 109.47372 * 0.02562 * 14 12 11 28 28 H 1.09004 * 109.46961 * 119.99946 * 14 12 11 29 29 H 1.09007 * 109.47036 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.46985 * 179.97438 * 16 15 14 31 31 H 1.08993 * 109.47245 * 59.99561 * 16 15 14 32 32 H 1.08998 * 109.47168 * 239.99927 * 17 16 15 33 33 H 1.09002 * 109.47046 * 120.00094 * 17 16 15 34 34 H 1.08995 * 109.46803 * 299.99905 * 18 12 11 35 35 H 1.09000 * 109.47391 * 59.99548 * 19 18 12 36 36 H 1.08998 * 109.47048 * 180.02562 * 19 18 12 37 37 H 1.09000 * 109.47463 * 180.02562 * 20 15 14 38 38 H 1.09004 * 109.46834 * 300.00198 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 1 3.3182 -5.8288 0.5864 14 6 2.8537 -6.3924 -1.4403 15 6 2.4378 -7.8227 -1.7894 16 6 0.9194 -7.9586 -1.6588 17 6 0.5009 -7.6421 -0.2216 18 6 1.7402 -7.2953 0.6060 19 6 2.7028 -8.4845 0.6047 20 6 3.1216 -8.8008 -0.8319 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5566 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8726 -3.6048 0.8877 25 1 2.8713 -3.6039 -0.8922 26 1 0.8740 -4.9838 -0.7836 27 1 2.3669 -5.6954 -2.1224 28 1 3.9355 -6.2956 -1.5334 29 1 2.7356 -8.0480 -2.8135 30 1 0.6230 -8.9775 -1.9079 31 1 0.4323 -7.2618 -2.3408 32 1 0.0057 -8.5108 0.2123 33 1 -0.1851 -6.7950 -0.2210 34 1 1.4421 -7.0698 1.6298 35 1 3.5860 -8.2377 1.1939 36 1 2.2075 -9.3533 1.0382 37 1 2.8256 -9.8199 -1.0809 38 1 4.2033 -8.7040 -0.9250 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379621637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:23 Heat of formation + Delta-G solvation = -34.827041 kcal Electronic energy + Delta-G solvation = -15731.220424 eV Core-core repulsion = 13378.597055 eV Total energy + Delta-G solvation = -2352.623369 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40028 -35.36614 -32.87482 -31.26666 -30.78181 -30.16994 -27.36185 -23.96292 -22.48663 -22.09654 -21.25613 -20.49852 -16.67249 -16.36975 -16.30365 -15.65621 -15.23495 -14.48678 -14.19735 -13.26163 -12.94514 -12.55552 -12.15800 -12.07734 -12.01617 -11.90797 -11.88567 -11.84074 -11.48357 -11.01802 -10.91338 -10.66228 -10.51105 -10.10881 -9.86449 -9.76059 -9.68470 -9.24994 -9.08748 -8.32575 -7.66541 -5.97209 -3.99561 3.33499 3.39611 3.43144 4.45099 4.59492 4.66092 4.72465 5.01007 5.34024 5.35965 5.38687 5.41480 5.43707 5.45207 5.48519 5.51916 5.63576 5.76351 5.86156 6.00786 6.12448 6.14517 6.26906 6.34828 6.36808 6.44810 6.46707 6.52112 6.56698 6.64554 7.03918 7.58108 7.78596 7.88715 8.04655 8.13948 8.47555 9.07895 9.64069 11.14275 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056523 B = 0.005260 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.256871 B = 5322.127224 C = 5429.485868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.686 5.686 12 C 0.093 3.907 13 H 0.070 0.930 14 C -0.142 4.142 15 C -0.084 4.084 16 C -0.114 4.114 17 C -0.112 4.112 18 C -0.074 4.074 19 C -0.114 4.114 20 C -0.112 4.112 21 H 0.260 0.740 22 H 0.012 0.988 23 H 0.025 0.975 24 H 0.056 0.944 25 H 0.014 0.986 26 H 0.336 0.664 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.084 -17.335 -2.066 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.316 5.316 12 C -0.017 4.017 13 H 0.089 0.911 14 C -0.181 4.181 15 C -0.102 4.102 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.093 4.093 19 C -0.152 4.152 20 C -0.149 4.149 21 H 0.070 0.930 22 H 0.031 0.969 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.154 0.846 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.845 -17.201 -1.368 17.679 hybrid contribution 0.827 1.018 -1.003 1.652 sum 4.672 -16.183 -2.371 17.010 Atomic orbital electron populations 1.69981 1.06026 1.26529 1.50781 1.25001 0.94833 0.99182 0.95349 0.86595 0.79848 0.83512 0.78035 1.20730 1.21197 1.19902 1.21191 0.92964 0.91084 1.50703 0.92825 1.19064 0.94053 0.90510 0.97607 1.22153 0.96935 0.88655 0.98420 1.60657 1.19323 1.01807 1.49799 1.21511 0.94961 0.91150 0.94104 0.91140 1.22387 1.00989 0.96282 0.98477 1.21001 0.95577 0.95239 0.98424 1.21547 0.95219 1.00872 0.97502 1.21478 0.97640 1.01207 0.94624 1.20992 0.94951 0.93606 0.99706 1.21538 0.99194 0.98053 0.96411 1.21522 0.99681 0.98460 0.95283 0.93031 0.96941 0.95704 0.92559 0.96815 0.84599 0.91773 0.92352 0.91875 0.92550 0.92178 0.92704 0.90950 0.90706 0.92252 0.92211 0.92434 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.67 5.23 -27.89 -0.15 0.52 16 10 C 0.07 1.43 5.42 -3.82 -0.02 1.41 16 11 N -0.69 -12.39 5.70 -106.72 -0.61 -13.00 16 12 C 0.09 1.39 2.43 -67.71 -0.16 1.22 16 13 H 0.07 1.10 7.80 -51.93 -0.40 0.69 16 14 C -0.14 -1.91 5.18 -26.73 -0.14 -2.05 16 15 C -0.08 -0.95 3.19 -90.62 -0.29 -1.24 16 16 C -0.11 -1.29 5.71 -26.73 -0.15 -1.44 16 17 C -0.11 -1.37 5.44 -26.73 -0.15 -1.51 16 18 C -0.07 -0.95 2.91 -90.62 -0.26 -1.21 16 19 C -0.11 -1.23 5.70 -26.76 -0.15 -1.39 16 20 C -0.11 -1.15 5.71 -26.76 -0.15 -1.30 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.22 8.05 -51.93 -0.42 0.81 16 25 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 26 H 0.34 5.97 7.43 -39.29 -0.29 5.68 16 27 H 0.06 0.94 7.52 -51.93 -0.39 0.55 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.99 7.21 -51.93 -0.37 0.61 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 291.11 15.07 4.39 4.39 Total: -1.00 -29.58 291.11 -9.45 -39.03 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.91 Total: -0.03 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.04 Total: -20.74 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.13 Total: -39.54 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.58 -9.45 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379621637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.204 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds