Wall clock time and date at job start Mon Mar 30 2020 02:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48498 * 109.47202 * 270.00148 * 3 2 1 5 5 H 1.48501 * 109.47603 * 30.00349 * 3 2 1 6 6 H 1.48506 * 109.47086 * 149.99988 * 3 2 1 7 7 C 1.37872 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47473 * 34.99539 * 12 11 10 14 14 C 1.53003 * 109.47021 * 274.99736 * 12 11 10 15 15 C 1.52992 * 109.47200 * 240.00080 * 14 12 11 16 16 C 1.53006 * 109.47088 * 60.00338 * 15 14 12 17 17 C 1.52997 * 109.46755 * 299.99576 * 16 15 14 18 18 C 1.53000 * 109.47187 * 154.99992 * 12 11 10 19 19 C 1.52996 * 109.47267 * 179.97438 * 18 12 11 20 20 C 1.53001 * 109.47433 * 300.00127 * 15 14 12 21 21 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 23 23 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 25 25 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 26 26 H 1.00901 * 110.99869 * 56.04956 * 11 10 9 27 27 H 1.09004 * 109.47372 * 0.02562 * 14 12 11 28 28 H 1.09004 * 109.46961 * 119.99946 * 14 12 11 29 29 H 1.09007 * 109.47036 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.46985 * 179.97438 * 16 15 14 31 31 H 1.08993 * 109.47245 * 59.99561 * 16 15 14 32 32 H 1.08998 * 109.47168 * 239.99927 * 17 16 15 33 33 H 1.09002 * 109.47046 * 120.00094 * 17 16 15 34 34 H 1.08995 * 109.46803 * 299.99905 * 18 12 11 35 35 H 1.09000 * 109.47391 * 59.99548 * 19 18 12 36 36 H 1.08998 * 109.47048 * 180.02562 * 19 18 12 37 37 H 1.09000 * 109.47463 * 180.02562 * 20 15 14 38 38 H 1.09004 * 109.46834 * 300.00198 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 1 3.3182 -5.8288 0.5864 14 6 2.8537 -6.3924 -1.4403 15 6 2.4378 -7.8227 -1.7894 16 6 0.9194 -7.9586 -1.6588 17 6 0.5009 -7.6421 -0.2216 18 6 1.7402 -7.2953 0.6060 19 6 2.7028 -8.4845 0.6047 20 6 3.1216 -8.8008 -0.8319 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5566 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8726 -3.6048 0.8877 25 1 2.8713 -3.6039 -0.8922 26 1 0.8740 -4.9838 -0.7836 27 1 2.3669 -5.6954 -2.1224 28 1 3.9355 -6.2956 -1.5334 29 1 2.7356 -8.0480 -2.8135 30 1 0.6230 -8.9775 -1.9079 31 1 0.4323 -7.2618 -2.3408 32 1 0.0057 -8.5108 0.2123 33 1 -0.1851 -6.7950 -0.2210 34 1 1.4421 -7.0698 1.6298 35 1 3.5860 -8.2377 1.1939 36 1 2.2075 -9.3533 1.0382 37 1 2.8256 -9.8199 -1.0809 38 1 4.2033 -8.7040 -0.9250 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379621637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:22 Heat of formation + Delta-G solvation = -51.962612 kcal Electronic energy + Delta-G solvation = -15731.963478 eV Core-core repulsion = 13378.597055 eV Total energy + Delta-G solvation = -2353.366423 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.43500 -36.97422 -34.92097 -32.29346 -31.87747 -31.66026 -28.96086 -25.90746 -23.40460 -23.21255 -22.40815 -22.33234 -18.54564 -17.76245 -17.33788 -16.67570 -16.51747 -16.37575 -15.78698 -14.69311 -14.57124 -14.04985 -13.64552 -13.29774 -13.10553 -12.96213 -12.89703 -12.86516 -12.83738 -12.81471 -12.53206 -12.39692 -12.01270 -11.60771 -11.44287 -11.28490 -10.84891 -10.71179 -10.58766 -10.56094 -9.15436 -8.21182 -6.33039 1.39428 1.41328 1.52550 2.39918 3.12072 3.34732 3.68711 3.73978 3.90482 4.31834 4.36174 4.39354 4.44255 4.47848 4.54724 4.55380 4.60749 4.64040 4.68045 4.79493 4.90566 5.05713 5.10118 5.17421 5.19308 5.34412 5.42921 5.44892 5.47599 5.53509 5.55345 5.62350 5.67653 5.79246 6.16182 6.34246 6.58837 6.84245 7.36377 8.91100 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056523 B = 0.005260 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.256871 B = 5322.127224 C = 5429.485868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.033 3.967 10 C 0.087 3.913 11 N -0.690 5.690 12 C 0.091 3.909 13 H 0.062 0.938 14 C -0.139 4.139 15 C -0.081 4.081 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.072 4.072 19 C -0.110 4.110 20 C -0.109 4.109 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.007 1.007 24 H 0.053 0.947 25 H 0.016 0.984 26 H 0.336 0.664 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.415 -18.433 -2.441 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.042 4.042 11 N -0.320 5.320 12 C -0.019 4.019 13 H 0.081 0.919 14 C -0.178 4.178 15 C -0.100 4.100 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.091 4.091 19 C -0.148 4.148 20 C -0.146 4.146 21 H 0.073 0.927 22 H 0.008 0.992 23 H 0.011 0.989 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.154 0.846 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.185 -18.324 -1.744 19.123 hybrid contribution 0.365 1.337 -0.871 1.637 sum 5.551 -16.987 -2.615 18.061 Atomic orbital electron populations 1.70117 1.07860 1.27826 1.51405 1.25987 0.95774 1.03407 0.94541 0.85403 0.78611 0.78211 0.78544 1.19650 1.20604 1.18754 1.21613 0.93485 0.92305 1.51002 0.92262 1.18911 0.94292 0.92403 0.94871 1.21750 0.95518 0.88661 0.98296 1.60598 1.19887 1.01515 1.50040 1.21614 0.94227 0.90603 0.95413 0.91930 1.22316 1.01065 0.97697 0.96757 1.21011 0.95614 0.93854 0.99519 1.21547 0.95210 1.01810 0.96418 1.21461 0.96947 1.00973 0.95497 1.20966 0.95765 0.93639 0.98751 1.21521 0.98702 0.97321 0.97254 1.21523 0.99949 0.98969 0.94184 0.92713 0.99246 0.98863 0.92811 0.96617 0.84551 0.93406 0.91906 0.90627 0.90541 0.93054 0.91144 0.93150 0.92137 0.92095 0.90650 0.90588 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.81 5.23 29.85 0.16 1.96 16 10 C 0.09 3.82 5.42 86.30 0.47 4.29 16 11 N -0.69 -25.59 5.70 -491.56 -2.80 -28.39 16 12 C 0.09 2.69 2.43 44.92 0.11 2.80 16 13 H 0.06 1.93 7.80 -2.39 -0.02 1.92 16 14 C -0.14 -3.60 5.18 30.59 0.16 -3.45 16 15 C -0.08 -1.66 3.19 -10.79 -0.03 -1.69 16 16 C -0.11 -2.32 5.71 30.60 0.17 -2.14 16 17 C -0.11 -2.59 5.44 30.59 0.17 -2.42 16 18 C -0.07 -1.79 2.91 -10.79 -0.03 -1.82 16 19 C -0.11 -2.11 5.70 30.58 0.17 -1.93 16 20 C -0.11 -1.88 5.71 30.58 0.17 -1.71 16 21 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 22 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 23 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 24 H 0.05 2.38 8.05 -2.39 -0.02 2.36 16 25 H 0.02 0.68 8.01 -2.39 -0.02 0.66 16 26 H 0.34 12.41 7.43 -89.69 -0.67 11.74 16 27 H 0.05 1.39 7.52 -2.38 -0.02 1.37 16 28 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.08 1.39 8.14 -2.38 -0.02 1.38 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.38 7.21 -2.39 -0.02 1.37 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -63.87 291.11 2.06 -61.82 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.34 Total: 14.65 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 2.21 Total: -37.39 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -2.52 Total: -86.07 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -63.87 2.06 -61.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379621637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.855 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds