Wall clock time and date at job start Mon Mar 30 2020 02:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48511 * 109.46893 * 270.00029 * 3 2 1 5 5 H 1.48502 * 109.47292 * 29.99986 * 3 2 1 6 6 H 1.48499 * 109.47119 * 150.00511 * 3 2 1 7 7 C 1.37875 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99324 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47066 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47252 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00598 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46566 * 325.00038 * 12 11 10 14 14 C 1.53005 * 109.47268 * 84.99490 * 12 11 10 15 15 C 1.52999 * 109.47159 * 119.99988 * 14 12 11 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 12 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.52998 * 109.47554 * 204.99999 * 12 11 10 19 19 C 1.52999 * 109.47086 * 180.02562 * 18 12 11 20 20 C 1.52997 * 109.47446 * 59.99803 * 19 18 12 21 21 H 0.97002 * 119.99386 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.46920 * 60.00503 * 9 7 2 23 23 H 1.08999 * 109.47766 * 300.00801 * 9 7 2 24 24 H 1.08996 * 109.47329 * 60.00333 * 10 9 7 25 25 H 1.09007 * 109.47320 * 300.00236 * 10 9 7 26 26 H 1.00903 * 110.99690 * 303.95505 * 11 10 9 27 27 H 1.09000 * 109.47360 * 240.00602 * 14 12 11 28 28 H 1.09002 * 109.46935 * 0.02562 * 14 12 11 29 29 H 1.08996 * 109.46929 * 179.97438 * 15 14 12 30 30 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 31 31 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47517 * 120.00106 * 17 16 15 33 33 H 1.09004 * 109.46796 * 240.00014 * 17 16 15 34 34 H 1.08993 * 109.46892 * 59.99576 * 18 12 11 35 35 H 1.09001 * 109.47218 * 179.97438 * 19 18 12 36 36 H 1.08994 * 109.47066 * 299.99818 * 19 18 12 37 37 H 1.09000 * 109.47140 * 240.00137 * 20 19 18 38 38 H 1.09001 * 109.47375 * 120.00120 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4351 -6.0759 -0.0006 13 1 3.3184 -5.8284 -0.5894 14 6 2.8528 -6.3932 1.4368 15 6 2.4366 -7.8237 1.7848 16 6 0.9183 -7.9595 1.6531 17 6 0.5007 -7.6423 0.2158 18 6 1.7405 -7.2949 -0.6107 19 6 2.7032 -8.4841 -0.6095 20 6 3.1202 -8.8012 0.8280 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.8719 -3.6044 0.8894 25 1 2.8720 -3.6043 -0.8905 26 1 0.8741 -4.9845 0.7800 27 1 3.9345 -6.2965 1.5306 28 1 2.3650 -5.6970 2.1190 29 1 2.7346 -8.0499 2.8086 30 1 0.4307 -7.2631 2.3353 31 1 0.6219 -8.9788 1.9007 32 1 0.0058 -8.5107 -0.2189 33 1 -0.1852 -6.7951 0.2154 34 1 1.4430 -7.0688 -1.6346 35 1 2.2082 -9.3528 -1.0438 36 1 3.5867 -8.2370 -1.1980 37 1 4.2019 -8.7047 0.9222 38 1 2.8235 -9.8203 1.0760 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379621638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:25 Heat of formation + Delta-G solvation = -34.839080 kcal Electronic energy + Delta-G solvation = -15731.444185 eV Core-core repulsion = 13378.820294 eV Total energy + Delta-G solvation = -2352.623891 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40259 -35.36746 -32.87552 -31.26892 -30.77907 -30.17000 -27.36223 -23.96310 -22.48710 -22.09760 -21.25475 -20.49878 -16.67268 -16.36938 -16.30377 -15.65662 -15.23488 -14.48776 -14.19649 -13.26150 -12.94568 -12.55524 -12.15879 -12.07725 -12.01521 -11.90886 -11.88536 -11.84034 -11.48331 -11.03465 -10.88653 -10.66220 -10.52250 -10.10867 -9.86461 -9.76043 -9.68422 -9.24847 -9.08929 -8.32536 -7.66643 -5.97233 -3.99566 3.33698 3.39616 3.42906 4.45090 4.59505 4.66154 4.72448 5.01055 5.34108 5.36013 5.38673 5.41409 5.43770 5.45225 5.48484 5.51924 5.63599 5.76352 5.86179 6.00759 6.12455 6.14504 6.26913 6.34829 6.36857 6.44795 6.46712 6.52113 6.56695 6.64550 7.03885 7.58127 7.78629 7.88651 8.04569 8.13935 8.47579 9.07910 9.64061 11.14249 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056528 B = 0.005260 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.208072 B = 5322.116045 C = 5429.417013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.685 5.685 12 C 0.093 3.907 13 H 0.070 0.930 14 C -0.142 4.142 15 C -0.084 4.084 16 C -0.114 4.114 17 C -0.112 4.112 18 C -0.074 4.074 19 C -0.114 4.114 20 C -0.112 4.112 21 H 0.260 0.740 22 H 0.024 0.976 23 H 0.012 0.988 24 H 0.014 0.986 25 H 0.056 0.944 26 H 0.335 0.665 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 -17.335 2.064 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.316 5.316 12 C -0.017 4.017 13 H 0.089 0.911 14 C -0.181 4.181 15 C -0.102 4.102 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.093 4.093 19 C -0.152 4.152 20 C -0.150 4.150 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.032 0.968 25 H 0.074 0.926 26 H 0.154 0.846 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.842 -17.201 1.376 17.678 hybrid contribution 0.828 1.017 0.981 1.638 sum 4.670 -16.184 2.357 17.008 Atomic orbital electron populations 1.69980 1.06027 1.26526 1.50779 1.25002 0.94831 0.99180 0.95346 0.86597 0.79792 0.83503 0.78107 1.20635 1.21233 1.19954 1.21189 0.92964 0.91084 1.50711 0.92824 1.19065 0.94051 0.90509 0.97604 1.22155 0.96937 0.88656 0.98423 1.60669 1.19304 1.01800 1.49791 1.21511 0.94970 0.91154 0.94102 0.91144 1.22388 1.00987 0.96282 0.98474 1.20986 0.95580 0.95244 0.98433 1.21548 0.95218 1.00868 0.97502 1.21480 0.97640 1.01206 0.94628 1.20992 0.94952 0.93608 0.99706 1.21547 0.99197 0.98049 0.96404 1.21517 0.99687 0.98464 0.95283 0.93031 0.95716 0.96933 0.96803 0.92568 0.84610 0.92346 0.91771 0.91874 0.92172 0.92549 0.92703 0.90950 0.90707 0.92212 0.92249 0.92394 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.67 5.23 -27.89 -0.15 0.52 16 10 C 0.07 1.43 5.42 -3.82 -0.02 1.41 16 11 N -0.69 -12.39 5.70 -106.73 -0.61 -13.00 16 12 C 0.09 1.39 2.42 -67.71 -0.16 1.22 16 13 H 0.07 1.10 7.80 -51.93 -0.40 0.69 16 14 C -0.14 -1.91 5.18 -26.73 -0.14 -2.05 16 15 C -0.08 -0.95 3.19 -90.66 -0.29 -1.24 16 16 C -0.11 -1.28 5.71 -26.73 -0.15 -1.44 16 17 C -0.11 -1.37 5.44 -26.73 -0.15 -1.51 16 18 C -0.07 -0.95 2.91 -90.62 -0.26 -1.21 16 19 C -0.11 -1.24 5.71 -26.73 -0.15 -1.39 16 20 C -0.11 -1.15 5.70 -26.77 -0.15 -1.31 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.02 0.71 8.14 -51.92 -0.42 0.28 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 25 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 26 H 0.34 5.97 7.42 -39.29 -0.29 5.68 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.94 7.52 -51.93 -0.39 0.55 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.99 7.21 -51.93 -0.37 0.61 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 291.11 15.07 4.39 4.39 Total: -1.00 -29.58 291.11 -9.45 -39.03 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.91 Total: -0.03 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.04 Total: -20.75 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.13 Total: -39.54 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.58 -9.45 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379621638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.193 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds