Wall clock time and date at job start Mon Mar 30 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48511 * 109.46893 * 270.00029 * 3 2 1 5 5 H 1.48502 * 109.47292 * 29.99986 * 3 2 1 6 6 H 1.48499 * 109.47119 * 150.00511 * 3 2 1 7 7 C 1.37875 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99324 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47066 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47252 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00598 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46566 * 325.00038 * 12 11 10 14 14 C 1.53005 * 109.47268 * 84.99490 * 12 11 10 15 15 C 1.52999 * 109.47159 * 119.99988 * 14 12 11 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 12 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.52998 * 109.47554 * 204.99999 * 12 11 10 19 19 C 1.52999 * 109.47086 * 180.02562 * 18 12 11 20 20 C 1.52997 * 109.47446 * 59.99803 * 19 18 12 21 21 H 0.97002 * 119.99386 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.46920 * 60.00503 * 9 7 2 23 23 H 1.08999 * 109.47766 * 300.00801 * 9 7 2 24 24 H 1.08996 * 109.47329 * 60.00333 * 10 9 7 25 25 H 1.09007 * 109.47320 * 300.00236 * 10 9 7 26 26 H 1.00903 * 110.99690 * 303.95505 * 11 10 9 27 27 H 1.09000 * 109.47360 * 240.00602 * 14 12 11 28 28 H 1.09002 * 109.46935 * 0.02562 * 14 12 11 29 29 H 1.08996 * 109.46929 * 179.97438 * 15 14 12 30 30 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 31 31 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47517 * 120.00106 * 17 16 15 33 33 H 1.09004 * 109.46796 * 240.00014 * 17 16 15 34 34 H 1.08993 * 109.46892 * 59.99576 * 18 12 11 35 35 H 1.09001 * 109.47218 * 179.97438 * 19 18 12 36 36 H 1.08994 * 109.47066 * 299.99818 * 19 18 12 37 37 H 1.09000 * 109.47140 * 240.00137 * 20 19 18 38 38 H 1.09001 * 109.47375 * 120.00120 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4351 -6.0759 -0.0006 13 1 3.3184 -5.8284 -0.5894 14 6 2.8528 -6.3932 1.4368 15 6 2.4366 -7.8237 1.7848 16 6 0.9183 -7.9595 1.6531 17 6 0.5007 -7.6423 0.2158 18 6 1.7405 -7.2949 -0.6107 19 6 2.7032 -8.4841 -0.6095 20 6 3.1202 -8.8012 0.8280 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.8719 -3.6044 0.8894 25 1 2.8720 -3.6043 -0.8905 26 1 0.8741 -4.9845 0.7800 27 1 3.9345 -6.2965 1.5306 28 1 2.3650 -5.6970 2.1190 29 1 2.7346 -8.0499 2.8086 30 1 0.4307 -7.2631 2.3353 31 1 0.6219 -8.9788 1.9007 32 1 0.0058 -8.5107 -0.2189 33 1 -0.1852 -6.7951 0.2154 34 1 1.4430 -7.0688 -1.6346 35 1 2.2082 -9.3528 -1.0438 36 1 3.5867 -8.2370 -1.1980 37 1 4.2019 -8.7047 0.9222 38 1 2.8235 -9.8203 1.0760 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379621638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:24 Heat of formation + Delta-G solvation = -51.976267 kcal Electronic energy + Delta-G solvation = -15732.187309 eV Core-core repulsion = 13378.820294 eV Total energy + Delta-G solvation = -2353.367015 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.43734 -36.97538 -34.92178 -32.29661 -31.87667 -31.65794 -28.96133 -25.90757 -23.40480 -23.21411 -22.40836 -22.33130 -18.54579 -17.76281 -17.33743 -16.67594 -16.51764 -16.37601 -15.78726 -14.69368 -14.57133 -14.04996 -13.64670 -13.30006 -13.10379 -12.95031 -12.89594 -12.86754 -12.83533 -12.82416 -12.53231 -12.39534 -12.01684 -11.60791 -11.44026 -11.28619 -10.84873 -10.71243 -10.58871 -10.55991 -9.15572 -8.21199 -6.33043 1.39466 1.41423 1.52392 2.39900 3.12065 3.34781 3.68670 3.74037 3.90489 4.31815 4.36205 4.39329 4.44291 4.47870 4.54757 4.55398 4.60646 4.63984 4.68066 4.79483 4.90609 5.05693 5.10098 5.17387 5.19293 5.34401 5.42918 5.44930 5.47641 5.53496 5.55342 5.62333 5.67595 5.79241 6.16196 6.34257 6.58714 6.84251 7.36366 8.91082 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056528 B = 0.005260 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.208072 B = 5322.116045 C = 5429.417013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.033 3.967 10 C 0.087 3.913 11 N -0.690 5.690 12 C 0.091 3.909 13 H 0.062 0.938 14 C -0.139 4.139 15 C -0.081 4.081 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.072 4.072 19 C -0.110 4.110 20 C -0.109 4.109 21 H 0.264 0.736 22 H -0.007 1.007 23 H -0.011 1.011 24 H 0.016 0.984 25 H 0.053 0.947 26 H 0.336 0.664 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 -18.433 2.423 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.042 4.042 11 N -0.320 5.320 12 C -0.019 4.019 13 H 0.081 0.919 14 C -0.178 4.178 15 C -0.100 4.100 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.091 4.091 19 C -0.148 4.148 20 C -0.146 4.146 21 H 0.073 0.927 22 H 0.011 0.989 23 H 0.008 0.992 24 H 0.034 0.966 25 H 0.072 0.928 26 H 0.154 0.846 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.181 -18.324 1.733 19.121 hybrid contribution 0.367 1.336 0.853 1.627 sum 5.548 -16.988 2.587 18.057 Atomic orbital electron populations 1.70117 1.07861 1.27824 1.51401 1.25989 0.95774 1.03406 0.94538 0.85406 0.78598 0.78212 0.78557 1.19691 1.20575 1.18740 1.21611 0.93486 0.92305 1.51008 0.92261 1.18912 0.94289 0.92402 0.94869 1.21752 0.95520 0.88663 0.98297 1.60611 1.19867 1.01510 1.50029 1.21614 0.94235 0.90606 0.95411 0.91931 1.22318 1.01061 0.97701 0.96757 1.20995 0.95618 0.93856 0.99528 1.21548 0.95208 1.01807 0.96418 1.21463 0.96945 1.00972 0.95502 1.20966 0.95766 0.93642 0.98749 1.21530 0.98705 0.97317 0.97247 1.21518 0.99955 0.98973 0.94185 0.92712 0.98875 0.99236 0.96627 0.92802 0.84563 0.91903 0.93405 0.90626 0.93048 0.90540 0.91143 0.93151 0.92136 0.90651 0.92092 0.91778 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.81 5.23 29.85 0.16 1.97 16 10 C 0.09 3.82 5.42 86.30 0.47 4.28 16 11 N -0.69 -25.58 5.70 -491.57 -2.80 -28.38 16 12 C 0.09 2.69 2.42 44.92 0.11 2.80 16 13 H 0.06 1.93 7.80 -2.39 -0.02 1.91 16 14 C -0.14 -3.61 5.18 30.60 0.16 -3.45 16 15 C -0.08 -1.66 3.19 -10.82 -0.03 -1.69 16 16 C -0.11 -2.32 5.71 30.59 0.17 -2.14 16 17 C -0.11 -2.59 5.44 30.59 0.17 -2.42 16 18 C -0.07 -1.79 2.91 -10.79 -0.03 -1.82 16 19 C -0.11 -2.11 5.71 30.59 0.17 -1.93 16 20 C -0.11 -1.88 5.70 30.57 0.17 -1.71 16 21 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 22 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 23 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 24 H 0.02 0.68 8.01 -2.39 -0.02 0.66 16 25 H 0.05 2.38 8.06 -2.38 -0.02 2.36 16 26 H 0.34 12.41 7.42 -89.69 -0.67 11.74 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.39 7.52 -2.39 -0.02 1.37 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.38 7.21 -2.39 -0.02 1.37 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -63.88 291.11 2.06 -61.82 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.34 Total: 14.65 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 2.21 Total: -37.39 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.52 Total: -86.07 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -63.88 2.06 -61.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379621638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.843 kcal (2) G-P(sol) polarization free energy of solvation -63.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds