Wall clock time and date at job start Mon Mar 30 2020 03:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00053 * 2 1 4 4 H 1.48493 * 109.46958 * 90.00007 * 3 2 1 5 5 H 1.48489 * 109.47059 * 210.00264 * 3 2 1 6 6 H 1.48501 * 109.46829 * 329.99926 * 3 2 1 7 7 C 1.37875 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00303 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47310 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99986 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47001 * 32.84764 * 11 10 9 13 13 C 1.52999 * 109.47346 * 272.84861 * 11 10 9 14 14 C 1.52992 * 109.47498 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47068 * 60.00079 * 14 13 11 16 16 C 1.53009 * 109.46980 * 300.00185 * 15 14 13 17 17 C 1.52996 * 109.47020 * 59.99606 * 16 15 14 18 18 H 1.09005 * 109.46966 * 60.00265 * 17 16 15 19 19 C 1.52999 * 109.47146 * 180.02562 * 17 16 15 20 20 C 1.53000 * 117.49718 * 3.23664 * 19 17 16 21 21 C 1.53007 * 117.49918 * 294.57955 * 19 17 16 22 22 H 0.97006 * 120.00172 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47326 * 300.00475 * 9 7 2 24 24 H 1.09006 * 109.46884 * 60.00150 * 9 7 2 25 25 H 1.00898 * 111.00138 * 303.94967 * 10 9 7 26 26 H 1.08999 * 109.47018 * 300.00322 * 13 11 10 27 27 H 1.09001 * 109.46953 * 59.99669 * 13 11 10 28 28 H 1.09000 * 109.47601 * 179.97438 * 14 13 11 29 29 H 1.08999 * 109.47436 * 300.00295 * 14 13 11 30 30 H 1.08999 * 109.46816 * 59.99836 * 15 14 13 31 31 H 1.08992 * 109.47494 * 180.02562 * 15 14 13 32 32 H 1.09001 * 109.47036 * 180.02562 * 16 15 14 33 33 H 1.09001 * 109.46589 * 300.00094 * 16 15 14 34 34 H 1.08997 * 115.55185 * 148.90294 * 19 17 16 35 35 H 1.08999 * 117.50131 * 359.97438 * 20 19 17 36 36 H 1.09001 * 117.50450 * 145.02253 * 20 19 17 37 37 H 1.09001 * 117.49523 * 214.97563 * 21 19 17 38 38 H 1.09001 * 117.49599 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5466 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 1 0.5734 -4.8147 -0.5589 13 6 1.1987 -5.3217 1.4393 14 6 0.4688 -6.6662 1.4387 15 6 1.3538 -7.7266 0.7802 16 6 1.6604 -7.3120 -0.6604 17 6 2.3902 -5.9673 -0.6596 18 1 3.3223 -6.0601 -0.1020 19 6 2.6963 -5.5524 -2.1001 20 6 2.1807 -6.4576 -3.2207 21 6 3.6754 -6.4210 -2.8927 22 1 -0.4851 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6241 -2.5567 -0.8904 25 1 2.8405 -3.5487 -0.7819 26 1 2.1307 -5.4139 1.9970 27 1 0.5680 -4.5664 1.9083 28 1 0.2508 -6.9619 2.4649 29 1 -0.4631 -6.5735 0.8811 30 1 2.2857 -7.8193 1.3378 31 1 0.8337 -8.6844 0.7793 32 1 2.2905 -8.0676 -1.1296 33 1 0.7284 -7.2192 -1.2179 34 1 2.7110 -4.4787 -2.2871 35 1 1.6237 -7.3488 -2.9317 36 1 1.8565 -5.9794 -4.1451 37 1 4.3339 -5.9187 -3.6013 38 1 4.1017 -7.2878 -2.3876 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379629402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:32 Heat of formation + Delta-G solvation = -1.166687 kcal Electronic energy + Delta-G solvation = -15789.072321 eV Core-core repulsion = 13437.908574 eV Total energy + Delta-G solvation = -2351.163746 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.42828 -36.11936 -34.44328 -32.31490 -29.99936 -28.94534 -25.72061 -23.80756 -22.32284 -22.08266 -20.68095 -19.98254 -18.87999 -16.58539 -15.73377 -14.94601 -14.58599 -14.49345 -14.03659 -13.78839 -13.33108 -13.05565 -12.41064 -12.12497 -11.74414 -11.56169 -11.44860 -11.20066 -11.10184 -10.89932 -10.73031 -10.63644 -10.38769 -10.23144 -10.08986 -9.87452 -9.63346 -9.37299 -9.06385 -8.44469 -7.19390 -5.99893 -4.01556 3.33961 3.39494 3.43403 3.96248 4.45533 4.77296 4.88018 4.96815 5.14155 5.16807 5.19706 5.35793 5.39142 5.58241 5.71757 5.72155 5.75206 5.83225 5.86161 5.91949 5.99407 6.13010 6.14498 6.22963 6.32956 6.37925 6.50320 6.54936 6.58346 6.75916 6.87962 7.35439 7.49206 7.84018 8.19396 8.49527 8.69909 9.08578 9.63311 11.11178 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030242 B = 0.006976 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.634106 B = 4013.042545 C = 4630.132844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.688 5.688 11 C 0.096 3.904 12 H 0.035 0.965 13 C -0.105 4.105 14 C -0.119 4.119 15 C -0.118 4.118 16 C -0.112 4.112 17 C -0.057 4.057 18 H 0.077 0.923 19 C -0.147 4.147 20 C -0.187 4.187 21 C -0.181 4.181 22 H 0.261 0.739 23 H 0.027 0.973 24 H -0.016 1.016 25 H 0.329 0.671 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 -14.874 -2.347 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.069 3.931 10 N -0.320 5.320 11 C -0.015 4.015 12 H 0.053 0.947 13 C -0.143 4.143 14 C -0.158 4.158 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.076 4.076 18 H 0.096 0.904 19 C -0.165 4.165 20 C -0.224 4.224 21 C -0.218 4.218 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.002 0.998 25 H 0.148 0.852 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.086 -14.720 -1.670 15.133 hybrid contribution 0.008 1.020 -0.950 1.394 sum 3.094 -13.701 -2.620 14.288 Atomic orbital electron populations 1.69968 1.06063 1.26682 1.51069 1.24988 0.94858 0.99307 0.95432 0.86504 0.79692 0.83122 0.78116 1.20629 1.19885 1.21337 1.21218 0.93495 0.90376 1.50109 0.92052 1.19568 0.90585 0.87381 0.95597 1.60721 1.21128 1.01079 1.49081 1.21393 0.95226 0.89994 0.94853 0.94710 1.21503 1.00311 0.95384 0.97139 1.21557 0.98657 0.95570 0.99966 1.21540 0.99869 0.97970 0.96137 1.21672 1.00215 0.96452 0.96616 1.20856 0.99163 0.94551 0.92986 0.90445 1.22482 1.03627 0.97795 0.92631 1.23110 0.96796 1.02619 0.99878 1.22915 0.92472 1.02623 1.03807 0.92980 0.95483 0.99796 0.85227 0.91838 0.91811 0.92415 0.92367 0.92146 0.92619 0.92383 0.91845 0.87440 0.88422 0.89357 0.89191 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.81 9.32 -34.44 -0.32 -15.14 16 8 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.20 5.23 5.24 -4.98 -0.03 5.20 16 10 N -0.69 -15.03 6.30 -107.99 -0.68 -15.71 16 11 C 0.10 1.74 1.97 -67.71 -0.13 1.60 16 12 H 0.03 0.69 7.77 -51.93 -0.40 0.29 16 13 C -0.11 -1.77 5.45 -26.74 -0.15 -1.92 16 14 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 15 C -0.12 -1.39 5.92 -26.72 -0.16 -1.54 16 16 C -0.11 -1.37 3.78 -26.73 -0.10 -1.48 16 17 C -0.06 -0.83 2.13 -90.62 -0.19 -1.03 16 18 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 19 C -0.15 -2.11 5.33 -90.62 -0.48 -2.60 16 20 C -0.19 -2.31 9.50 -26.69 -0.25 -2.57 16 21 C -0.18 -2.17 9.96 -26.69 -0.27 -2.44 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.03 0.78 7.59 -51.93 -0.39 0.39 16 24 H -0.02 -0.45 8.05 -51.93 -0.42 -0.87 16 25 H 0.33 6.92 6.24 -39.29 -0.25 6.67 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.21 7.60 -51.93 -0.39 0.81 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.64 7.20 -51.93 -0.37 0.26 16 33 H 0.06 0.80 7.25 -51.93 -0.38 0.42 16 34 H 0.11 1.77 6.43 -51.93 -0.33 1.44 16 35 H 0.10 1.11 5.82 -51.93 -0.30 0.81 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 0.99 7.96 -51.93 -0.41 0.58 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -29.66 293.56 -9.46 -39.12 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.58 Total: 3.85 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -2.34 Total: -22.15 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.06 Total: -42.22 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.66 -9.46 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379629402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.953 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds