Wall clock time and date at job start Mon Mar 30 2020 03:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00053 * 2 1 4 4 H 1.48493 * 109.46958 * 90.00007 * 3 2 1 5 5 H 1.48489 * 109.47059 * 210.00264 * 3 2 1 6 6 H 1.48501 * 109.46829 * 329.99926 * 3 2 1 7 7 C 1.37875 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00303 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47310 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99986 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47001 * 32.84764 * 11 10 9 13 13 C 1.52999 * 109.47346 * 272.84861 * 11 10 9 14 14 C 1.52992 * 109.47498 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47068 * 60.00079 * 14 13 11 16 16 C 1.53009 * 109.46980 * 300.00185 * 15 14 13 17 17 C 1.52996 * 109.47020 * 59.99606 * 16 15 14 18 18 H 1.09005 * 109.46966 * 60.00265 * 17 16 15 19 19 C 1.52999 * 109.47146 * 180.02562 * 17 16 15 20 20 C 1.53000 * 117.49718 * 3.23664 * 19 17 16 21 21 C 1.53007 * 117.49918 * 294.57955 * 19 17 16 22 22 H 0.97006 * 120.00172 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47326 * 300.00475 * 9 7 2 24 24 H 1.09006 * 109.46884 * 60.00150 * 9 7 2 25 25 H 1.00898 * 111.00138 * 303.94967 * 10 9 7 26 26 H 1.08999 * 109.47018 * 300.00322 * 13 11 10 27 27 H 1.09001 * 109.46953 * 59.99669 * 13 11 10 28 28 H 1.09000 * 109.47601 * 179.97438 * 14 13 11 29 29 H 1.08999 * 109.47436 * 300.00295 * 14 13 11 30 30 H 1.08999 * 109.46816 * 59.99836 * 15 14 13 31 31 H 1.08992 * 109.47494 * 180.02562 * 15 14 13 32 32 H 1.09001 * 109.47036 * 180.02562 * 16 15 14 33 33 H 1.09001 * 109.46589 * 300.00094 * 16 15 14 34 34 H 1.08997 * 115.55185 * 148.90294 * 19 17 16 35 35 H 1.08999 * 117.50131 * 359.97438 * 20 19 17 36 36 H 1.09001 * 117.50450 * 145.02253 * 20 19 17 37 37 H 1.09001 * 117.49523 * 214.97563 * 21 19 17 38 38 H 1.09001 * 117.49599 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5466 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 1 0.5734 -4.8147 -0.5589 13 6 1.1987 -5.3217 1.4393 14 6 0.4688 -6.6662 1.4387 15 6 1.3538 -7.7266 0.7802 16 6 1.6604 -7.3120 -0.6604 17 6 2.3902 -5.9673 -0.6596 18 1 3.3223 -6.0601 -0.1020 19 6 2.6963 -5.5524 -2.1001 20 6 2.1807 -6.4576 -3.2207 21 6 3.6754 -6.4210 -2.8927 22 1 -0.4851 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6241 -2.5567 -0.8904 25 1 2.8405 -3.5487 -0.7819 26 1 2.1307 -5.4139 1.9970 27 1 0.5680 -4.5664 1.9083 28 1 0.2508 -6.9619 2.4649 29 1 -0.4631 -6.5735 0.8811 30 1 2.2857 -7.8193 1.3378 31 1 0.8337 -8.6844 0.7793 32 1 2.2905 -8.0676 -1.1296 33 1 0.7284 -7.2192 -1.2179 34 1 2.7110 -4.4787 -2.2871 35 1 1.6237 -7.3488 -2.9317 36 1 1.8565 -5.9794 -4.1451 37 1 4.3339 -5.9187 -3.6013 38 1 4.1017 -7.2878 -2.3876 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379629402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:32 Heat of formation + Delta-G solvation = -18.782436 kcal Electronic energy + Delta-G solvation = -15789.836197 eV Core-core repulsion = 13437.908574 eV Total energy + Delta-G solvation = -2351.927623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65384 -37.32798 -36.15796 -34.35891 -31.15118 -30.59845 -27.67425 -24.98497 -23.99228 -23.25803 -22.18770 -21.18436 -20.10484 -18.62098 -17.15343 -16.69040 -16.06404 -15.93059 -15.24750 -15.11994 -14.86096 -14.35726 -14.14529 -13.73643 -13.52934 -12.95174 -12.81137 -12.58386 -12.49635 -12.35360 -12.33150 -12.05351 -11.96615 -11.48744 -11.41879 -11.36377 -10.99678 -10.78136 -10.68134 -10.57369 -9.09247 -8.24637 -6.36593 1.38526 1.41081 1.52250 2.37981 2.93062 3.08082 3.51973 3.66812 3.79555 4.03886 4.09593 4.16279 4.22371 4.41853 4.44660 4.57416 4.62767 4.65121 4.77983 4.82330 4.93283 4.99198 5.03430 5.10865 5.19827 5.24715 5.29026 5.30339 5.33576 5.37060 5.40299 5.44739 5.56130 5.65348 6.02799 6.48454 6.74207 6.89938 7.34804 8.87114 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030242 B = 0.006976 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.634106 B = 4013.042545 C = 4630.132844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.215 3.785 10 N -0.686 5.686 11 C 0.093 3.907 12 H 0.010 0.990 13 C -0.103 4.103 14 C -0.114 4.114 15 C -0.113 4.113 16 C -0.107 4.107 17 C -0.045 4.045 18 H 0.077 0.923 19 C -0.178 4.178 20 C -0.180 4.180 21 C -0.160 4.160 22 H 0.265 0.735 23 H -0.004 1.004 24 H -0.047 1.047 25 H 0.333 0.667 26 H 0.064 0.936 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 -16.399 -2.649 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.187 1.187 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.087 3.913 10 N -0.318 5.318 11 C -0.017 4.017 12 H 0.028 0.972 13 C -0.142 4.142 14 C -0.153 4.153 15 C -0.150 4.150 16 C -0.145 4.145 17 C -0.064 4.064 18 H 0.095 0.905 19 C -0.196 4.196 20 C -0.217 4.217 21 C -0.197 4.197 22 H 0.074 0.926 23 H 0.014 0.986 24 H -0.030 1.030 25 H 0.153 0.847 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.518 -16.271 -1.973 17.001 hybrid contribution -0.471 1.486 -0.859 1.780 sum 4.047 -14.785 -2.831 15.588 Atomic orbital electron populations 1.70105 1.07885 1.28018 1.51470 1.25995 0.95813 1.03494 0.94475 0.85304 0.78499 0.77776 0.78551 1.19722 1.18693 1.20516 1.21567 0.93762 0.91541 1.50725 0.91847 1.19154 0.90533 0.89074 0.92571 1.60644 1.20334 1.01554 1.49257 1.21526 0.94746 0.89421 0.95969 0.97199 1.21483 1.00162 0.96759 0.95769 1.21530 0.98386 0.93977 1.01357 1.21537 1.00011 0.98143 0.95340 1.21669 1.00166 0.95218 0.97434 1.20737 0.98388 0.94566 0.92699 0.90497 1.22355 1.07268 0.96709 0.93291 1.23204 0.97558 1.02228 0.98689 1.23005 0.92216 1.01991 1.02511 0.92592 0.98564 1.02980 0.84742 0.91692 0.95207 0.90758 0.92875 0.91366 0.89955 0.89760 0.92176 0.90597 0.86835 0.89462 0.88616 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.54 -32.05 9.32 25.60 0.24 -31.81 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 9 C 0.21 12.21 5.24 85.56 0.45 12.65 16 10 N -0.69 -31.51 6.30 -495.56 -3.12 -34.63 16 11 C 0.09 3.52 1.97 44.91 0.09 3.61 16 12 H 0.01 0.42 7.77 -2.38 -0.02 0.40 16 13 C -0.10 -3.59 5.45 30.59 0.17 -3.42 16 14 C -0.11 -2.96 5.92 30.59 0.18 -2.77 16 15 C -0.11 -2.31 5.92 30.60 0.18 -2.12 16 16 C -0.11 -2.35 3.78 30.60 0.12 -2.23 16 17 C -0.05 -1.29 2.13 -10.80 -0.02 -1.31 16 18 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 19 C -0.18 -5.03 5.33 -10.79 -0.06 -5.09 16 20 C -0.18 -4.12 9.50 30.62 0.29 -3.83 16 21 C -0.16 -3.44 9.96 30.62 0.31 -3.14 16 22 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 23 H 0.00 -0.23 7.59 -2.38 -0.02 -0.25 16 24 H -0.05 -2.93 8.05 -2.38 -0.02 -2.94 16 25 H 0.33 14.70 6.24 -89.70 -0.56 14.14 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.03 1.20 7.60 -2.39 -0.02 1.18 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.47 7.20 -2.39 -0.02 1.46 16 33 H 0.06 1.38 7.25 -2.39 -0.02 1.36 16 34 H 0.08 2.62 6.43 -2.39 -0.02 2.61 16 35 H 0.11 2.24 5.82 -2.39 -0.01 2.22 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.11 1.96 7.96 -2.39 -0.02 1.94 16 Total: -1.00 -66.26 293.56 2.04 -64.22 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.46 Total: 19.91 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 2.40 Total: -38.99 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -2.84 Total: -92.64 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -66.26 2.04 -64.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379629402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.438 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds