Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99867 * 2 1 4 4 H 1.48499 * 109.46969 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47101 * 300.00168 * 3 2 1 6 6 H 1.48490 * 109.47157 * 60.00191 * 3 2 1 7 7 C 1.37876 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46771 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99715 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47459 * 324.99946 * 11 10 9 13 13 C 1.52997 * 109.46907 * 85.00213 * 11 10 9 14 14 C 1.53002 * 109.47415 * 59.99794 * 13 11 10 15 15 C 1.53002 * 109.47128 * 59.99994 * 14 13 11 16 16 C 1.53005 * 109.47197 * 300.00273 * 15 14 13 17 17 C 1.53002 * 109.47053 * 204.99863 * 11 10 9 18 18 H 1.09002 * 109.47097 * 180.02562 * 17 11 10 19 19 C 1.52997 * 109.46978 * 60.00394 * 17 11 10 20 20 C 1.52999 * 117.50226 * 128.74782 * 19 17 11 21 21 C 1.53005 * 117.50317 * 60.08385 * 19 17 11 22 22 H 0.97003 * 120.00294 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.46873 * 60.00546 * 9 7 2 24 24 H 1.09001 * 109.46926 * 299.99860 * 9 7 2 25 25 H 1.00903 * 111.00454 * 303.95384 * 10 9 7 26 26 H 1.09002 * 109.47045 * 179.97438 * 13 11 10 27 27 H 1.09000 * 109.47140 * 299.99770 * 13 11 10 28 28 H 1.09002 * 109.47070 * 300.00053 * 14 13 11 29 29 H 1.08996 * 109.47407 * 179.97438 * 14 13 11 30 30 H 1.08998 * 109.47844 * 179.97438 * 15 14 13 31 31 H 1.09002 * 109.46838 * 59.99590 * 15 14 13 32 32 H 1.09002 * 109.46935 * 299.99901 * 16 15 14 33 33 H 1.09000 * 109.47360 * 179.97438 * 16 15 14 34 34 H 1.08999 * 115.54863 * 274.41646 * 19 17 11 35 35 H 1.09001 * 117.49305 * 359.97438 * 20 19 17 36 36 H 1.08996 * 117.50253 * 145.02334 * 20 19 17 37 37 H 1.08999 * 117.49843 * 214.98324 * 21 19 17 38 38 H 1.09005 * 117.48997 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6156 -0.0005 11 6 1.5053 -4.9070 0.0001 12 1 0.5924 -4.8250 0.5898 13 6 1.1513 -5.2958 -1.4367 14 6 2.4328 -5.4110 -2.2645 15 6 3.3392 -6.4824 -1.6549 16 6 3.6933 -6.0936 -0.2180 17 6 2.4117 -5.9784 0.6097 18 1 1.8922 -6.9367 0.6097 19 6 2.7657 -5.5896 2.0465 20 6 2.5416 -6.6383 3.1378 21 6 1.6126 -5.4256 3.0386 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8405 -3.5486 -0.7819 26 1 0.6320 -6.2542 -1.4363 27 1 0.5056 -4.5326 -1.8710 28 1 2.9524 -4.4528 -2.2649 29 1 2.1806 -5.6884 -3.2880 30 1 4.2520 -6.5648 -2.2448 31 1 2.8195 -7.4405 -1.6544 32 1 4.2129 -5.1354 -0.2185 33 1 4.3386 -6.8571 0.2164 34 1 3.6223 -4.9245 2.1560 35 1 2.1414 -7.6050 2.8322 36 1 3.2503 -6.6627 3.9655 37 1 1.7107 -4.6529 3.8010 38 1 0.6017 -5.5952 2.6677 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379629403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -2.053235 kcal Electronic energy + Delta-G solvation = -15995.366852 eV Core-core repulsion = 13644.164662 eV Total energy + Delta-G solvation = -2351.202190 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.28437 -36.17023 -33.94420 -32.09525 -30.20761 -28.98961 -25.76709 -22.96712 -22.49111 -21.78056 -21.48729 -19.80616 -18.34148 -16.48692 -15.62656 -15.05526 -14.53685 -14.15108 -14.08471 -13.80159 -13.00836 -12.88796 -12.44645 -11.96347 -11.77633 -11.55977 -11.41093 -11.25032 -11.04728 -10.83213 -10.67000 -10.60834 -10.12440 -10.09654 -9.95190 -9.84925 -9.55383 -9.31126 -8.99799 -8.44081 -7.10640 -5.99100 -4.00203 3.32536 3.39877 3.44831 4.24045 4.46292 4.87834 5.08382 5.12055 5.33054 5.36087 5.36848 5.40624 5.47628 5.65980 5.76991 5.87578 5.88772 5.91802 5.96065 6.00061 6.13985 6.20910 6.28866 6.35370 6.46034 6.47812 6.50709 6.64882 6.69726 6.76541 6.93449 7.37526 7.53924 7.85246 8.21141 8.52306 8.73485 9.10408 9.64571 11.11940 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.007885 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.690686 B = 3550.201786 C = 4066.450643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.676 5.676 11 C 0.094 3.906 12 H 0.069 0.931 13 C -0.150 4.150 14 C -0.120 4.120 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.042 4.042 18 H 0.058 0.942 19 C -0.111 4.111 20 C -0.199 4.199 21 C -0.173 4.173 22 H 0.259 0.741 23 H -0.016 1.016 24 H 0.025 0.975 25 H 0.327 0.673 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.629 -13.166 -0.097 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.079 0.921 9 C 0.069 3.931 10 N -0.308 5.308 11 C -0.018 4.018 12 H 0.087 0.913 13 C -0.189 4.189 14 C -0.158 4.158 15 C -0.154 4.154 16 C -0.147 4.147 17 C -0.061 4.061 18 H 0.076 0.924 19 C -0.130 4.130 20 C -0.236 4.236 21 C -0.210 4.210 22 H 0.069 0.931 23 H 0.002 0.998 24 H 0.043 0.957 25 H 0.146 0.854 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.564 -13.016 0.594 13.806 hybrid contribution -0.113 0.980 -0.890 1.329 sum 4.451 -12.036 -0.296 12.836 Atomic orbital electron populations 1.69973 1.06036 1.26497 1.51300 1.24980 0.94838 0.99261 0.95547 0.86480 0.80096 0.83616 0.77438 1.19713 1.21189 1.21077 1.21242 0.93462 0.90384 1.49731 0.92097 1.19536 0.90685 0.87457 0.95460 1.60765 1.20581 1.00708 1.48726 1.21482 0.96048 0.91052 0.93183 0.91317 1.22209 0.97468 1.01104 0.98122 1.21514 0.96534 0.99435 0.98269 1.21519 0.98955 0.98360 0.96535 1.21505 0.97322 1.01787 0.94122 1.20713 0.95940 0.96998 0.92424 0.92362 1.22070 1.00429 1.00259 0.90202 1.23056 1.04139 0.94137 1.02272 1.22794 0.95705 0.99449 1.03018 0.93096 0.99845 0.95653 0.85376 0.92729 0.91863 0.91457 0.92708 0.92560 0.92714 0.90844 0.92810 0.87623 0.89698 0.89689 0.89207 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.46 9.32 -34.44 -0.32 -14.78 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.20 5.09 5.24 -4.98 -0.03 5.07 16 10 N -0.68 -14.12 5.34 -107.99 -0.58 -14.69 16 11 C 0.09 1.64 2.14 -67.71 -0.14 1.49 16 12 H 0.07 1.32 6.95 -51.93 -0.36 0.95 16 13 C -0.15 -2.39 5.52 -26.73 -0.15 -2.54 16 14 C -0.12 -1.71 5.67 -26.73 -0.15 -1.86 16 15 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 16 C -0.11 -1.49 4.95 -26.73 -0.13 -1.62 16 17 C -0.04 -0.62 2.16 -90.62 -0.20 -0.81 16 18 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 19 C -0.11 -1.70 4.75 -90.62 -0.43 -2.13 16 20 C -0.20 -2.60 10.18 -26.69 -0.27 -2.87 16 21 C -0.17 -2.63 9.74 -26.69 -0.26 -2.89 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H -0.02 -0.45 7.44 -51.93 -0.39 -0.84 16 24 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 25 H 0.33 6.67 5.56 -39.29 -0.22 6.45 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.14 7.45 -51.93 -0.39 0.75 16 28 H 0.07 1.05 6.26 -51.93 -0.32 0.73 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.10 7.21 -51.93 -0.37 0.73 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 1.75 8.11 -51.93 -0.42 1.33 16 35 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.09 1.34 7.61 -51.93 -0.40 0.94 16 LS Contribution 294.24 15.07 4.43 4.43 Total: -1.00 -28.96 294.24 -9.38 -38.34 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.62 Total: 4.43 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.34 Total: -23.07 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.16 Total: -41.01 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.96 -9.38 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379629403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.286 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds