Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99867 * 2 1 4 4 H 1.48499 * 109.46969 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47101 * 300.00168 * 3 2 1 6 6 H 1.48490 * 109.47157 * 60.00191 * 3 2 1 7 7 C 1.37876 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46771 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99715 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47459 * 324.99946 * 11 10 9 13 13 C 1.52997 * 109.46907 * 85.00213 * 11 10 9 14 14 C 1.53002 * 109.47415 * 59.99794 * 13 11 10 15 15 C 1.53002 * 109.47128 * 59.99994 * 14 13 11 16 16 C 1.53005 * 109.47197 * 300.00273 * 15 14 13 17 17 C 1.53002 * 109.47053 * 204.99863 * 11 10 9 18 18 H 1.09002 * 109.47097 * 180.02562 * 17 11 10 19 19 C 1.52997 * 109.46978 * 60.00394 * 17 11 10 20 20 C 1.52999 * 117.50226 * 128.74782 * 19 17 11 21 21 C 1.53005 * 117.50317 * 60.08385 * 19 17 11 22 22 H 0.97003 * 120.00294 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.46873 * 60.00546 * 9 7 2 24 24 H 1.09001 * 109.46926 * 299.99860 * 9 7 2 25 25 H 1.00903 * 111.00454 * 303.95384 * 10 9 7 26 26 H 1.09002 * 109.47045 * 179.97438 * 13 11 10 27 27 H 1.09000 * 109.47140 * 299.99770 * 13 11 10 28 28 H 1.09002 * 109.47070 * 300.00053 * 14 13 11 29 29 H 1.08996 * 109.47407 * 179.97438 * 14 13 11 30 30 H 1.08998 * 109.47844 * 179.97438 * 15 14 13 31 31 H 1.09002 * 109.46838 * 59.99590 * 15 14 13 32 32 H 1.09002 * 109.46935 * 299.99901 * 16 15 14 33 33 H 1.09000 * 109.47360 * 179.97438 * 16 15 14 34 34 H 1.08999 * 115.54863 * 274.41646 * 19 17 11 35 35 H 1.09001 * 117.49305 * 359.97438 * 20 19 17 36 36 H 1.08996 * 117.50253 * 145.02334 * 20 19 17 37 37 H 1.08999 * 117.49843 * 214.98324 * 21 19 17 38 38 H 1.09005 * 117.48997 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6156 -0.0005 11 6 1.5053 -4.9070 0.0001 12 1 0.5924 -4.8250 0.5898 13 6 1.1513 -5.2958 -1.4367 14 6 2.4328 -5.4110 -2.2645 15 6 3.3392 -6.4824 -1.6549 16 6 3.6933 -6.0936 -0.2180 17 6 2.4117 -5.9784 0.6097 18 1 1.8922 -6.9367 0.6097 19 6 2.7657 -5.5896 2.0465 20 6 2.5416 -6.6383 3.1378 21 6 1.6126 -5.4256 3.0386 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8405 -3.5486 -0.7819 26 1 0.6320 -6.2542 -1.4363 27 1 0.5056 -4.5326 -1.8710 28 1 2.9524 -4.4528 -2.2649 29 1 2.1806 -5.6884 -3.2880 30 1 4.2520 -6.5648 -2.2448 31 1 2.8195 -7.4405 -1.6544 32 1 4.2129 -5.1354 -0.2185 33 1 4.3386 -6.8571 0.2164 34 1 3.6223 -4.9245 2.1560 35 1 2.1414 -7.6050 2.8322 36 1 3.2503 -6.6627 3.9655 37 1 1.7107 -4.6529 3.8010 38 1 0.6017 -5.5952 2.6677 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379629403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -18.327949 kcal Electronic energy + Delta-G solvation = -15996.072577 eV Core-core repulsion = 13644.164662 eV Total energy + Delta-G solvation = -2351.907915 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58834 -37.41252 -35.76634 -34.01719 -31.39824 -30.57083 -27.74662 -24.18694 -24.00192 -23.49773 -22.68074 -21.00777 -19.72837 -18.52635 -17.12115 -16.57442 -16.28823 -15.42188 -15.38398 -15.31610 -14.52513 -14.23673 -14.13035 -13.51131 -13.42302 -13.15767 -12.89606 -12.71195 -12.41582 -12.38249 -12.25660 -11.95676 -11.89597 -11.42963 -11.28821 -11.19706 -11.13262 -10.74182 -10.63062 -10.44381 -8.89682 -8.21420 -6.32003 1.39169 1.39916 1.53726 2.39589 3.06005 3.11569 3.61205 3.88203 3.93970 3.95106 4.18290 4.21449 4.22723 4.47556 4.54562 4.65870 4.69060 4.77788 4.78487 4.86783 4.92740 4.98854 5.09149 5.12821 5.20947 5.28951 5.31073 5.34319 5.38444 5.45674 5.50769 5.57258 5.64767 5.73981 6.07644 6.56096 6.81755 6.99018 7.39156 8.90156 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.007885 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.690686 B = 3550.201786 C = 4066.450643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.215 3.785 10 N -0.670 5.670 11 C 0.090 3.910 12 H 0.044 0.956 13 C -0.146 4.146 14 C -0.118 4.118 15 C -0.109 4.109 16 C -0.107 4.107 17 C -0.033 4.033 18 H 0.078 0.922 19 C -0.128 4.128 20 C -0.164 4.164 21 C -0.195 4.195 22 H 0.263 0.737 23 H -0.045 1.045 24 H -0.009 1.009 25 H 0.332 0.668 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 -14.608 -0.361 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.568 4.568 8 H 0.080 0.920 9 C 0.087 3.913 10 N -0.301 5.301 11 C -0.020 4.020 12 H 0.062 0.938 13 C -0.185 4.185 14 C -0.156 4.156 15 C -0.146 4.146 16 C -0.145 4.145 17 C -0.052 4.052 18 H 0.096 0.904 19 C -0.146 4.146 20 C -0.201 4.201 21 C -0.232 4.232 22 H 0.072 0.928 23 H -0.027 1.027 24 H 0.009 0.991 25 H 0.151 0.849 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.246 -14.483 0.328 15.776 hybrid contribution -0.684 1.394 -0.787 1.741 sum 5.562 -13.089 -0.459 14.229 Atomic orbital electron populations 1.70106 1.07793 1.27739 1.51908 1.25945 0.95759 1.03326 0.94799 0.85318 0.78987 0.78499 0.77694 1.18642 1.20317 1.20497 1.21586 0.93672 0.91583 1.49958 0.91976 1.19110 0.90631 0.89117 0.92428 1.60658 1.19645 1.00857 1.48977 1.21578 0.95716 0.90342 0.94397 0.93784 1.22144 0.98339 1.01165 0.96873 1.21510 0.95624 0.99392 0.99054 1.21493 0.99412 0.98112 0.95624 1.21489 0.96534 1.01578 0.94861 1.20655 0.96155 0.96262 0.92090 0.90370 1.22065 0.99702 1.01746 0.91080 1.23115 1.02306 0.93668 1.00963 1.22789 0.95805 1.01294 1.03361 0.92775 1.02703 0.99057 0.84855 0.90356 0.94968 0.93471 0.91050 0.90729 0.90885 0.92799 0.90592 0.89351 0.87707 0.88197 0.90417 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.53 -30.93 9.32 25.60 0.24 -30.69 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.22 11.85 5.24 85.56 0.45 12.29 16 10 N -0.67 -29.02 5.34 -495.58 -2.65 -31.67 16 11 C 0.09 3.22 2.14 44.91 0.10 3.32 16 12 H 0.04 1.77 6.95 -2.39 -0.02 1.76 16 13 C -0.15 -4.64 5.52 30.59 0.17 -4.47 16 14 C -0.12 -3.19 5.67 30.60 0.17 -3.02 16 15 C -0.11 -2.37 5.92 30.60 0.18 -2.19 16 16 C -0.11 -2.64 4.95 30.60 0.15 -2.49 16 17 C -0.03 -0.92 2.16 -10.79 -0.02 -0.94 16 18 H 0.08 1.93 7.90 -2.39 -0.02 1.91 16 19 C -0.13 -3.79 4.75 -10.79 -0.05 -3.84 16 20 C -0.16 -3.87 10.18 30.62 0.31 -3.56 16 21 C -0.20 -5.98 9.74 30.62 0.30 -5.68 16 22 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 23 H -0.04 -2.66 7.44 -2.39 -0.02 -2.68 16 24 H -0.01 -0.53 8.05 -2.39 -0.02 -0.55 16 25 H 0.33 13.91 5.56 -89.69 -0.50 13.41 16 26 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.03 1.20 7.45 -2.39 -0.02 1.18 16 28 H 0.05 1.46 6.26 -2.39 -0.01 1.45 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.55 7.21 -2.39 -0.02 1.53 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 2.92 8.11 -2.39 -0.02 2.91 16 35 H 0.10 2.11 8.05 -2.39 -0.02 2.09 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.08 2.54 7.61 -2.38 -0.02 2.52 16 Total: -1.00 -64.08 294.24 2.63 -61.45 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.51 Total: 21.30 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 2.46 Total: -40.84 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -2.36 Total: -89.22 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -64.08 2.63 -61.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379629403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.121 kcal (2) G-P(sol) polarization free energy of solvation -64.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds