Wall clock time and date at job start Mon Mar 30 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99957 * 2 1 4 4 H 1.48499 * 109.47237 * 269.99911 * 3 2 1 5 5 H 1.48504 * 109.46698 * 29.99973 * 3 2 1 6 6 H 1.48502 * 109.46787 * 149.99887 * 3 2 1 7 7 C 1.37877 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99880 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99662 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.46661 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99888 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47005 * 35.00510 * 11 10 9 13 13 C 1.52998 * 109.47160 * 275.00077 * 11 10 9 14 14 C 1.53000 * 109.47012 * 299.99801 * 13 11 10 15 15 C 1.52994 * 109.47410 * 299.99924 * 14 13 11 16 16 C 1.53007 * 109.47007 * 59.99923 * 15 14 13 17 17 C 1.52992 * 109.47232 * 300.00065 * 16 15 14 18 18 H 1.09002 * 109.47274 * 300.00009 * 17 16 15 19 19 C 1.52998 * 109.47146 * 179.97438 * 17 16 15 20 20 C 1.53001 * 117.50078 * 128.74912 * 19 17 16 21 21 C 1.52994 * 117.49933 * 60.08738 * 19 17 16 22 22 H 0.96997 * 119.99893 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47155 * 60.00217 * 9 7 2 24 24 H 1.08997 * 109.47111 * 300.00138 * 9 7 2 25 25 H 1.00902 * 111.00533 * 56.04452 * 10 9 7 26 26 H 1.09001 * 109.47093 * 60.00016 * 13 11 10 27 27 H 1.09002 * 109.47121 * 179.97438 * 13 11 10 28 28 H 1.09007 * 109.47050 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47176 * 60.00036 * 14 13 11 30 30 H 1.09002 * 109.47517 * 299.99953 * 15 14 13 31 31 H 1.09002 * 109.47548 * 179.97438 * 15 14 13 32 32 H 1.09001 * 109.47129 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.46474 * 60.00286 * 16 15 14 34 34 H 1.09007 * 115.54943 * 274.41407 * 19 17 16 35 35 H 1.09001 * 117.49711 * 359.97438 * 20 19 17 36 36 H 1.08998 * 117.49724 * 145.01639 * 20 19 17 37 37 H 1.09003 * 117.50103 * 214.97812 * 21 19 17 38 38 H 1.08998 * 117.50123 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5789 0.0010 11 6 5.4698 -2.6181 0.0022 12 1 5.8549 -1.7866 0.5923 13 6 5.9841 -2.5055 -1.4344 14 6 5.4435 -3.6728 -2.2626 15 6 5.9179 -4.9935 -1.6531 16 6 5.4036 -5.1061 -0.2165 17 6 5.9442 -3.9389 0.6117 18 1 7.0338 -3.9680 0.6126 19 6 5.4294 -4.0512 2.0481 20 6 6.4598 -3.9706 3.1763 21 6 5.8007 -5.3095 2.8353 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8911 24 1 3.8753 -0.6803 -0.8888 25 1 3.6260 -3.0951 -0.7806 26 1 5.6461 -1.5646 -1.8686 27 1 7.0737 -2.5342 -1.4334 28 1 5.8103 -3.5929 -3.2860 29 1 4.3538 -3.6438 -2.2635 30 1 7.0075 -5.0227 -1.6523 31 1 5.5324 -5.8252 -2.2429 32 1 5.7412 -6.0473 0.2175 33 1 4.3139 -5.0771 -0.2175 34 1 4.4475 -3.6144 2.2311 35 1 7.5045 -3.8380 2.8951 36 1 6.1557 -3.4812 4.1015 37 1 5.0634 -5.7004 3.5365 38 1 6.4114 -6.0575 2.3298 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379629404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:37 Heat of formation + Delta-G solvation = 2.041980 kcal Electronic energy + Delta-G solvation = -15977.069433 eV Core-core repulsion = 13626.044825 eV Total energy + Delta-G solvation = -2351.024608 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38839 -36.34150 -34.04067 -32.16421 -30.18601 -29.39196 -26.20336 -23.19687 -22.51091 -21.60341 -21.34869 -19.80479 -18.56250 -16.78661 -15.84674 -15.20687 -14.50564 -14.28758 -14.01171 -13.87763 -13.10780 -12.92334 -12.68284 -12.28515 -11.97580 -11.75953 -11.64100 -11.34774 -11.28100 -10.86114 -10.67753 -10.42116 -10.24077 -10.20285 -10.00705 -9.76101 -9.60930 -9.36365 -9.19505 -8.57848 -7.35096 -6.03920 -4.01145 3.29224 3.36958 3.40087 4.11255 4.43755 4.80539 4.98318 5.02898 5.23994 5.24980 5.27457 5.28866 5.32777 5.63326 5.65929 5.77305 5.79324 5.81789 5.87748 5.91922 6.02768 6.05113 6.19215 6.24370 6.33348 6.40081 6.43247 6.54209 6.62001 6.72502 6.86908 6.93063 7.10264 7.66791 7.97730 8.43821 8.69547 9.04731 9.58846 11.09505 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.008117 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.300588 B = 3448.858944 C = 3900.680444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.078 0.922 9 C 0.164 3.836 10 N -0.669 5.669 11 C 0.090 3.910 12 H 0.069 0.931 13 C -0.149 4.149 14 C -0.121 4.121 15 C -0.117 4.117 16 C -0.111 4.111 17 C -0.040 4.040 18 H 0.058 0.942 19 C -0.124 4.124 20 C -0.191 4.191 21 C -0.188 4.188 22 H 0.263 0.737 23 H 0.024 0.976 24 H -0.022 1.022 25 H 0.335 0.665 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.986 -8.424 -0.158 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.551 4.551 8 H 0.096 0.904 9 C 0.036 3.964 10 N -0.301 5.301 11 C -0.021 4.021 12 H 0.088 0.912 13 C -0.189 4.189 14 C -0.159 4.159 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.059 4.059 18 H 0.077 0.923 19 C -0.142 4.142 20 C -0.228 4.228 21 C -0.225 4.225 22 H 0.073 0.927 23 H 0.042 0.958 24 H -0.005 1.005 25 H 0.156 0.844 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.142 0.858 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.757 -8.365 0.533 16.110 hybrid contribution 0.604 1.300 -0.903 1.694 sum 14.361 -7.066 -0.370 16.009 Atomic orbital electron populations 1.69904 1.06152 1.26788 1.51237 1.24909 0.94719 0.98905 0.94838 0.86835 0.80377 0.83972 0.78373 1.20455 1.21242 1.19154 1.21081 0.89101 0.94680 1.50262 0.90386 1.20016 0.96395 0.85462 0.94543 1.60601 1.03926 1.16156 1.49419 1.21494 0.90566 0.96585 0.93491 0.91248 1.22199 1.00291 0.98526 0.97859 1.21524 1.01413 0.94618 0.98317 1.21528 1.00103 0.97172 0.96613 1.21510 1.02076 0.97279 0.93961 1.20674 0.97723 0.95006 0.92467 0.92338 1.22397 1.00441 1.00093 0.91295 1.22981 0.98048 1.01124 1.00617 1.22885 1.03888 0.91365 1.04328 0.92730 0.95754 1.00458 0.84435 0.92023 0.92465 0.92564 0.91334 0.92723 0.92437 0.92725 0.90677 0.85813 0.89625 0.89383 0.89376 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.51 -14.65 9.87 -34.44 -0.34 -14.99 16 8 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 9 C 0.16 3.95 4.31 -4.97 -0.02 3.93 16 10 N -0.67 -13.42 4.93 -107.99 -0.53 -13.95 16 11 C 0.09 1.48 2.30 -67.71 -0.16 1.33 16 12 H 0.07 1.22 7.80 -51.93 -0.40 0.82 16 13 C -0.15 -2.22 5.52 -26.73 -0.15 -2.36 16 14 C -0.12 -1.64 5.67 -26.73 -0.15 -1.79 16 15 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 16 C -0.11 -1.47 4.80 -26.73 -0.13 -1.60 16 17 C -0.04 -0.56 2.16 -90.62 -0.20 -0.76 16 18 H 0.06 0.78 7.90 -51.93 -0.41 0.36 16 19 C -0.12 -1.84 5.01 -90.62 -0.45 -2.29 16 20 C -0.19 -2.46 10.18 -26.69 -0.27 -2.74 16 21 C -0.19 -2.36 9.74 -26.70 -0.26 -2.62 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.02 0.61 7.11 -51.93 -0.37 0.24 16 24 H -0.02 -0.53 6.86 -51.93 -0.36 -0.89 16 25 H 0.34 6.65 5.56 -39.29 -0.22 6.43 16 26 H 0.06 1.00 7.45 -51.93 -0.39 0.61 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.03 6.26 -51.93 -0.32 0.71 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.66 7.29 -51.93 -0.38 0.28 16 33 H 0.07 1.13 7.21 -51.93 -0.37 0.75 16 34 H 0.12 2.21 7.50 -51.92 -0.39 1.82 16 35 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 0.99 7.61 -51.93 -0.40 0.60 16 LS Contribution 289.90 15.07 4.37 4.37 Total: -1.00 -29.29 289.90 -9.00 -38.28 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.55 Total: 4.84 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.38 Total: -23.59 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.24 Total: -41.04 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.29 -9.00 -38.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379629404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.323 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds