Wall clock time and date at job start Mon Mar 30 2020 03:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99957 * 2 1 4 4 H 1.48499 * 109.47237 * 269.99911 * 3 2 1 5 5 H 1.48504 * 109.46698 * 29.99973 * 3 2 1 6 6 H 1.48502 * 109.46787 * 149.99887 * 3 2 1 7 7 C 1.37877 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99880 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99662 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.46661 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99888 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47005 * 35.00510 * 11 10 9 13 13 C 1.52998 * 109.47160 * 275.00077 * 11 10 9 14 14 C 1.53000 * 109.47012 * 299.99801 * 13 11 10 15 15 C 1.52994 * 109.47410 * 299.99924 * 14 13 11 16 16 C 1.53007 * 109.47007 * 59.99923 * 15 14 13 17 17 C 1.52992 * 109.47232 * 300.00065 * 16 15 14 18 18 H 1.09002 * 109.47274 * 300.00009 * 17 16 15 19 19 C 1.52998 * 109.47146 * 179.97438 * 17 16 15 20 20 C 1.53001 * 117.50078 * 128.74912 * 19 17 16 21 21 C 1.52994 * 117.49933 * 60.08738 * 19 17 16 22 22 H 0.96997 * 119.99893 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47155 * 60.00217 * 9 7 2 24 24 H 1.08997 * 109.47111 * 300.00138 * 9 7 2 25 25 H 1.00902 * 111.00533 * 56.04452 * 10 9 7 26 26 H 1.09001 * 109.47093 * 60.00016 * 13 11 10 27 27 H 1.09002 * 109.47121 * 179.97438 * 13 11 10 28 28 H 1.09007 * 109.47050 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47176 * 60.00036 * 14 13 11 30 30 H 1.09002 * 109.47517 * 299.99953 * 15 14 13 31 31 H 1.09002 * 109.47548 * 179.97438 * 15 14 13 32 32 H 1.09001 * 109.47129 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.46474 * 60.00286 * 16 15 14 34 34 H 1.09007 * 115.54943 * 274.41407 * 19 17 16 35 35 H 1.09001 * 117.49711 * 359.97438 * 20 19 17 36 36 H 1.08998 * 117.49724 * 145.01639 * 20 19 17 37 37 H 1.09003 * 117.50103 * 214.97812 * 21 19 17 38 38 H 1.08998 * 117.50123 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5789 0.0010 11 6 5.4698 -2.6181 0.0022 12 1 5.8549 -1.7866 0.5923 13 6 5.9841 -2.5055 -1.4344 14 6 5.4435 -3.6728 -2.2626 15 6 5.9179 -4.9935 -1.6531 16 6 5.4036 -5.1061 -0.2165 17 6 5.9442 -3.9389 0.6117 18 1 7.0338 -3.9680 0.6126 19 6 5.4294 -4.0512 2.0481 20 6 6.4598 -3.9706 3.1763 21 6 5.8007 -5.3095 2.8353 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8911 24 1 3.8753 -0.6803 -0.8888 25 1 3.6260 -3.0951 -0.7806 26 1 5.6461 -1.5646 -1.8686 27 1 7.0737 -2.5342 -1.4334 28 1 5.8103 -3.5929 -3.2860 29 1 4.3538 -3.6438 -2.2635 30 1 7.0075 -5.0227 -1.6523 31 1 5.5324 -5.8252 -2.2429 32 1 5.7412 -6.0473 0.2175 33 1 4.3139 -5.0771 -0.2175 34 1 4.4475 -3.6144 2.2311 35 1 7.5045 -3.8380 2.8951 36 1 6.1557 -3.4812 4.1015 37 1 5.0634 -5.7004 3.5365 38 1 6.4114 -6.0575 2.3298 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379629404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:36 Heat of formation + Delta-G solvation = -15.053623 kcal Electronic energy + Delta-G solvation = -15977.810754 eV Core-core repulsion = 13626.044825 eV Total energy + Delta-G solvation = -2351.765929 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.59690 -37.49669 -35.73943 -34.14060 -31.28689 -30.92249 -28.05439 -24.30215 -23.63300 -23.39588 -22.60182 -20.94543 -19.87396 -18.84674 -17.24002 -16.51886 -16.16688 -15.65052 -15.45567 -15.10864 -14.69866 -14.34994 -14.08892 -13.84261 -13.47884 -13.30544 -12.87039 -12.67723 -12.41605 -12.32023 -12.16931 -11.88305 -11.83096 -11.55919 -11.29813 -11.23318 -11.08837 -10.82317 -10.75016 -10.43471 -8.97026 -8.30953 -6.34357 1.31536 1.33918 1.45288 2.32382 3.03230 3.05463 3.57938 3.76638 3.92345 3.98498 4.16973 4.22232 4.24583 4.49097 4.54617 4.65058 4.67799 4.70703 4.79721 4.82723 4.87128 4.89101 5.03520 5.09124 5.13864 5.18447 5.31072 5.33709 5.36601 5.44385 5.50128 5.56138 5.60107 5.74957 6.02895 6.62876 6.70253 6.84835 7.30883 8.85954 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.008117 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.300588 B = 3448.858944 C = 3900.680444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.523 4.523 8 H 0.036 0.964 9 C 0.178 3.822 10 N -0.674 5.674 11 C 0.086 3.914 12 H 0.057 0.943 13 C -0.145 4.145 14 C -0.121 4.121 15 C -0.110 4.110 16 C -0.108 4.108 17 C -0.031 4.031 18 H 0.081 0.919 19 C -0.149 4.149 20 C -0.183 4.183 21 C -0.173 4.173 22 H 0.267 0.733 23 H 0.018 0.982 24 H -0.019 1.019 25 H 0.335 0.665 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.048 -8.701 -0.440 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.562 4.562 8 H 0.054 0.946 9 C 0.049 3.951 10 N -0.306 5.306 11 C -0.024 4.024 12 H 0.076 0.924 13 C -0.185 4.185 14 C -0.159 4.159 15 C -0.148 4.148 16 C -0.146 4.146 17 C -0.049 4.049 18 H 0.099 0.901 19 C -0.168 4.168 20 C -0.220 4.220 21 C -0.210 4.210 22 H 0.076 0.924 23 H 0.036 0.964 24 H -0.001 1.001 25 H 0.155 0.845 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.837 -8.664 0.251 18.937 hybrid contribution -0.409 1.295 -0.786 1.569 sum 16.429 -7.369 -0.535 18.013 Atomic orbital electron populations 1.70057 1.08106 1.28112 1.52586 1.25864 0.95613 1.03195 0.94294 0.85683 0.79322 0.78606 0.79107 1.19165 1.20591 1.17650 1.21354 0.91535 0.93259 1.50009 0.94594 1.19708 0.93401 0.87859 0.94109 1.60507 1.06743 1.13678 1.49678 1.21609 0.87940 0.97869 0.94971 0.92421 1.22147 1.01795 0.98180 0.96329 1.21528 0.99909 0.95159 0.99278 1.21500 1.01250 0.96469 0.95537 1.21491 1.00427 0.97709 0.94981 1.20615 0.98757 0.93717 0.91846 0.90059 1.22224 0.99457 1.02510 0.92579 1.23062 0.98350 1.01084 0.99512 1.22948 1.03557 0.91155 1.03294 0.92425 0.96373 1.00135 0.84494 0.93885 0.89848 0.90889 0.93771 0.90667 0.91245 0.90938 0.93380 0.89843 0.87855 0.89633 0.89398 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 2 C 0.01 0.46 5.47 84.65 0.46 0.92 16 3 Si 0.95 45.23 27.47 68.60 1.88 47.11 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.25 -11.37 6.54 99.48 0.65 -10.71 16 7 C -0.52 -31.06 9.87 25.60 0.25 -30.80 16 8 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 9 C 0.18 8.73 4.31 85.56 0.37 9.10 16 10 N -0.67 -27.72 4.93 -495.56 -2.44 -30.16 16 11 C 0.09 2.79 2.30 44.92 0.10 2.89 16 12 H 0.06 1.98 7.80 -2.39 -0.02 1.96 16 13 C -0.15 -4.04 5.52 30.59 0.17 -3.87 16 14 C -0.12 -3.07 5.67 30.59 0.17 -2.89 16 15 C -0.11 -2.33 5.92 30.59 0.18 -2.15 16 16 C -0.11 -2.66 4.80 30.59 0.15 -2.51 16 17 C -0.03 -0.81 2.16 -10.79 -0.02 -0.83 16 18 H 0.08 1.83 7.90 -2.39 -0.02 1.81 16 19 C -0.15 -4.30 5.01 -10.80 -0.05 -4.35 16 20 C -0.18 -4.35 10.18 30.62 0.31 -4.04 16 21 C -0.17 -3.97 9.74 30.62 0.30 -3.68 16 22 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 23 H 0.02 0.91 7.11 -2.39 -0.02 0.90 16 24 H -0.02 -0.91 6.86 -2.39 -0.02 -0.93 16 25 H 0.33 13.82 5.56 -89.69 -0.50 13.32 16 26 H 0.04 1.34 7.45 -2.39 -0.02 1.33 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.04 1.33 6.26 -2.39 -0.01 1.31 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.53 7.29 -2.39 -0.02 1.51 16 33 H 0.05 1.44 7.21 -2.39 -0.02 1.42 16 34 H 0.08 3.10 7.50 -2.38 -0.02 3.08 16 35 H 0.10 2.10 8.05 -2.39 -0.02 2.08 16 36 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.11 2.04 7.61 -2.39 -0.02 2.02 16 Total: -1.00 -65.06 289.90 2.59 -62.47 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.46 Total: 22.85 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 2.39 Total: -42.23 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -2.14 Total: -90.20 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.11 kcal Total: -65.06 2.59 -62.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379629404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.412 kcal (2) G-P(sol) polarization free energy of solvation -65.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds