Wall clock time and date at job start Mon Mar 30 2020 02:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 N 1.46898 * 109.47006 * 240.00218 * 2 1 3 13 13 C 1.46906 * 110.99961 * 84.99970 * 12 2 1 14 14 C 1.52993 * 109.47228 * 179.97438 * 13 12 2 15 15 C 1.52999 * 109.47582 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47615 * 179.97438 * 15 14 13 17 17 C 1.39871 * 125.89879 * 124.99628 * 16 15 14 18 18 C 1.35316 * 107.92299 * 180.02562 * 17 16 15 19 19 N 1.34948 * 107.74491 * 359.97438 * 18 17 16 20 20 H 0.96996 * 126.04096 * 180.02562 * 19 18 17 21 21 N 1.30837 * 125.90026 * 304.69280 * 16 15 14 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 24 24 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 25 25 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 26 26 H 1.00893 * 111.00338 * 321.04590 * 12 2 1 27 27 H 1.08996 * 109.46971 * 299.99790 * 13 12 2 28 28 H 1.08994 * 109.47376 * 59.99710 * 13 12 2 29 29 H 1.09009 * 109.47286 * 300.00086 * 14 13 12 30 30 H 1.09003 * 109.47627 * 59.99632 * 14 13 12 31 31 H 1.09005 * 109.46588 * 299.99907 * 15 14 13 32 32 H 1.09001 * 109.47422 * 59.99419 * 15 14 13 33 33 H 1.08006 * 126.03998 * 0.02686 * 17 16 15 34 34 H 1.07999 * 126.13016 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6622 0.4206 -4.7691 16 6 3.1688 -0.3232 -5.9778 17 6 2.5255 -0.4096 -7.2168 18 6 3.2966 -1.1628 -8.0348 19 7 4.3895 -1.5392 -7.3383 20 1 5.1179 -2.0865 -7.6712 21 7 4.2890 -0.9952 -6.0513 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7095 1.1617 3.4844 26 1 1.4497 -1.4978 -1.4101 27 1 1.0871 0.6164 -2.5525 28 1 2.7588 1.0463 -2.1183 29 1 3.5917 -0.9261 -3.3683 30 1 1.9202 -1.3565 -3.8031 31 1 1.6668 0.8143 -4.9752 32 1 3.3384 1.2442 -4.5400 33 1 1.5802 0.0446 -7.4750 34 1 3.0769 -1.4172 -9.0612 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379663509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:00 Heat of formation + Delta-G solvation = 58.835946 kcal Electronic energy + Delta-G solvation = -14506.541701 eV Core-core repulsion = 12054.439521 eV Total energy + Delta-G solvation = -2452.102180 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.18554 -36.45983 -34.30167 -32.34357 -30.55468 -30.01324 -27.99876 -25.14652 -24.66744 -21.74302 -20.80940 -20.16849 -19.44408 -18.22184 -16.18651 -15.18204 -14.74724 -14.63257 -14.40476 -13.62238 -13.48233 -13.33274 -12.96970 -12.50672 -11.94225 -11.63418 -11.38246 -11.04308 -10.85523 -10.70433 -10.60240 -10.55334 -10.14174 -10.02957 -9.75821 -9.35590 -8.91835 -8.81725 -8.28955 -7.10860 -5.91314 -3.94262 1.81828 2.73363 2.81676 3.39745 3.42939 3.47013 4.49828 4.61906 4.71673 5.07733 5.37837 5.40122 5.45124 5.64264 5.73290 5.81704 5.98544 6.04407 6.14251 6.27768 6.58459 6.65798 6.75772 6.77873 6.92533 7.17786 7.18971 7.47522 7.64480 7.81541 7.96968 8.36846 8.65304 8.72769 9.13070 9.70872 11.15763 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.061925 B = 0.004245 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.050738 B = 6594.037923 C = 6885.761355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.686 5.686 13 C 0.061 3.939 14 C -0.108 4.108 15 C -0.040 4.040 16 C 0.086 3.914 17 C -0.271 4.271 18 C 0.051 3.949 19 N -0.483 5.483 20 H 0.437 0.563 21 N -0.288 5.288 22 H 0.027 0.973 23 H 0.088 0.912 24 H 0.005 0.995 25 H 0.259 0.741 26 H 0.324 0.676 27 H 0.017 0.983 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 -2.131 -19.684 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.315 5.315 13 C -0.070 4.070 14 C -0.147 4.147 15 C -0.080 4.080 16 C -0.081 4.081 17 C -0.301 4.301 18 C -0.096 4.096 19 N -0.191 5.191 20 H 0.280 0.720 21 N -0.112 5.112 22 H 0.046 0.954 23 H 0.107 0.893 24 H 0.024 0.976 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.825 -2.285 -18.752 19.274 hybrid contribution -1.118 -0.383 -0.153 1.192 sum 2.707 -2.668 -18.905 19.284 Atomic orbital electron populations 1.22427 1.00802 0.99113 1.00423 1.19172 0.89543 0.94433 0.86637 0.94904 1.21158 1.30057 1.12381 0.89707 0.92028 1.24951 0.95399 0.95238 0.99006 1.69877 1.37460 1.23247 1.23341 0.86570 0.79193 0.79589 0.82068 1.20301 1.21505 1.20408 1.60774 1.58020 1.09122 1.03584 1.21891 0.98211 0.96063 0.90789 1.21521 1.02678 0.97608 0.92889 1.20081 1.01028 0.97210 0.89703 1.22490 0.92236 0.97105 0.96284 1.21509 1.04363 1.10195 0.94033 1.22554 0.89196 0.99084 0.98769 1.46398 1.19469 1.43265 1.09973 0.72005 1.77380 1.20571 1.16011 0.97206 0.95426 0.89335 0.97614 0.93090 0.86025 0.96477 0.91797 0.90739 0.92582 0.90113 0.90062 0.83596 0.80938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.94 37.16 0.33 -3.83 16 2 C 0.21 5.47 2.57 -68.86 -0.18 5.29 16 3 H 0.03 0.93 7.80 -51.93 -0.40 0.53 16 4 C -0.49 -14.14 8.84 -34.45 -0.30 -14.44 16 5 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -26.30 11.32 55.43 0.63 -25.67 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.69 -15.23 6.23 -107.95 -0.67 -15.90 16 13 C 0.06 1.11 5.48 -3.82 -0.02 1.09 16 14 C -0.11 -1.68 5.44 -26.74 -0.15 -1.83 16 15 C -0.04 -0.52 5.79 -27.89 -0.16 -0.69 16 16 C 0.09 1.14 6.49 -82.41 -0.53 0.61 16 17 C -0.27 -2.92 10.72 -40.01 -0.43 -3.35 16 18 C 0.05 0.44 11.99 -17.22 -0.21 0.24 16 19 N -0.48 -4.83 7.36 30.45 0.22 -4.61 16 20 H 0.44 2.86 8.96 -182.61 -1.64 1.23 16 21 N -0.29 -4.06 12.67 33.67 0.43 -3.63 16 22 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 23 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 24 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.32 6.84 8.47 -39.30 -0.33 6.51 16 27 H 0.02 0.31 7.44 -51.93 -0.39 -0.08 16 28 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 29 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.15 1.28 8.06 -52.48 -0.42 0.85 16 34 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 287.17 15.07 4.33 4.33 Total: -1.00 -32.17 287.17 -8.21 -40.38 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.38 Total: 3.59 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -1.74 Total: -15.46 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.61 Total: -49.81 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.17 -8.21 -40.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379663509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.219 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds