Wall clock time and date at job start Mon Mar 30 2020 02:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 N 1.46898 * 109.47006 * 240.00218 * 2 1 3 13 13 C 1.46906 * 110.99961 * 84.99970 * 12 2 1 14 14 C 1.52993 * 109.47228 * 179.97438 * 13 12 2 15 15 C 1.52999 * 109.47582 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47615 * 179.97438 * 15 14 13 17 17 C 1.39871 * 125.89879 * 124.99628 * 16 15 14 18 18 C 1.35316 * 107.92299 * 180.02562 * 17 16 15 19 19 N 1.34948 * 107.74491 * 359.97438 * 18 17 16 20 20 H 0.96996 * 126.04096 * 180.02562 * 19 18 17 21 21 N 1.30837 * 125.90026 * 304.69280 * 16 15 14 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 24 24 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 25 25 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 26 26 H 1.00893 * 111.00338 * 321.04590 * 12 2 1 27 27 H 1.08996 * 109.46971 * 299.99790 * 13 12 2 28 28 H 1.08994 * 109.47376 * 59.99710 * 13 12 2 29 29 H 1.09009 * 109.47286 * 300.00086 * 14 13 12 30 30 H 1.09003 * 109.47627 * 59.99632 * 14 13 12 31 31 H 1.09005 * 109.46588 * 299.99907 * 15 14 13 32 32 H 1.09001 * 109.47422 * 59.99419 * 15 14 13 33 33 H 1.08006 * 126.03998 * 0.02686 * 17 16 15 34 34 H 1.07999 * 126.13016 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6622 0.4206 -4.7691 16 6 3.1688 -0.3232 -5.9778 17 6 2.5255 -0.4096 -7.2168 18 6 3.2966 -1.1628 -8.0348 19 7 4.3895 -1.5392 -7.3383 20 1 5.1179 -2.0865 -7.6712 21 7 4.2890 -0.9952 -6.0513 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7095 1.1617 3.4844 26 1 1.4497 -1.4978 -1.4101 27 1 1.0871 0.6164 -2.5525 28 1 2.7588 1.0463 -2.1183 29 1 3.5917 -0.9261 -3.3683 30 1 1.9202 -1.3565 -3.8031 31 1 1.6668 0.8143 -4.9752 32 1 3.3384 1.2442 -4.5400 33 1 1.5802 0.0446 -7.4750 34 1 3.0769 -1.4172 -9.0612 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379663509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:00 Heat of formation + Delta-G solvation = 36.167026 kcal Electronic energy + Delta-G solvation = -14507.524699 eV Core-core repulsion = 12054.439521 eV Total energy + Delta-G solvation = -2453.085179 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.99306 -38.17047 -35.78171 -34.10726 -31.92076 -30.80297 -29.61256 -27.23383 -26.13368 -22.84636 -22.13277 -21.88294 -20.43171 -18.96735 -18.31531 -16.74106 -16.49666 -15.94966 -15.52660 -15.09748 -14.71437 -14.35760 -14.26739 -14.00631 -13.58331 -13.29280 -12.98144 -12.80251 -12.61087 -12.36965 -12.20649 -12.14373 -11.76248 -11.72460 -11.30861 -11.00371 -10.46841 -10.27353 -9.59405 -8.91690 -8.08012 -6.19501 1.04912 1.43890 1.46190 1.53936 1.88805 2.12893 2.45651 3.19725 3.59685 3.83212 4.07135 4.18117 4.35105 4.54892 4.66069 4.73304 4.77571 4.86832 4.90874 4.94786 4.96696 5.11571 5.15011 5.34923 5.38808 5.48845 5.71021 5.76202 5.85443 6.29902 6.55897 6.68894 6.81449 6.87035 6.96845 7.50567 8.97362 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.061925 B = 0.004245 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.050738 B = 6594.037923 C = 6885.761355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H 0.002 0.998 4 C -0.519 4.519 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.693 5.693 13 C 0.064 3.936 14 C -0.091 4.091 15 C -0.035 4.035 16 C 0.067 3.933 17 C -0.294 4.294 18 C 0.072 3.928 19 N -0.478 5.478 20 H 0.449 0.551 21 N -0.339 5.339 22 H 0.031 0.969 23 H 0.062 0.938 24 H 0.027 0.973 25 H 0.261 0.739 26 H 0.331 0.669 27 H 0.027 0.973 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.164 0.836 34 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.950 -2.888 -21.240 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.104 3.896 3 H 0.020 0.980 4 C -0.558 4.558 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.323 5.323 13 C -0.066 4.066 14 C -0.130 4.130 15 C -0.074 4.074 16 C -0.100 4.100 17 C -0.323 4.323 18 C -0.076 4.076 19 N -0.187 5.187 20 H 0.295 0.705 21 N -0.163 5.163 22 H 0.050 0.950 23 H 0.081 0.919 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.181 0.819 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.584 -3.051 -20.325 20.863 hybrid contribution -1.016 -0.151 0.227 1.052 sum 2.568 -3.202 -20.098 20.513 Atomic orbital electron populations 1.22226 0.99795 0.99247 1.00185 1.18959 0.90233 0.92709 0.87656 0.98045 1.21461 1.30528 1.12528 0.91273 0.92930 1.25729 0.95448 0.95909 1.01892 1.70002 1.38013 1.24217 1.24064 0.85560 0.78594 0.78703 0.78425 1.20025 1.20782 1.19598 1.60645 1.57958 1.09830 1.03882 1.21917 0.98617 0.95506 0.90535 1.21309 1.01190 0.97861 0.92629 1.19999 1.02156 0.96464 0.88820 1.22577 0.92686 0.97500 0.97190 1.21834 1.05584 1.11417 0.93437 1.23277 0.87473 0.96742 1.00133 1.46452 1.20392 1.42887 1.09005 0.70461 1.77285 1.21652 1.17704 0.99703 0.94968 0.91944 0.95361 0.92955 0.85254 0.95486 0.92877 0.92794 0.92270 0.88198 0.90318 0.81864 0.76267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.66 8.94 71.98 0.64 -7.02 16 2 C 0.21 11.26 2.57 44.17 0.11 11.37 16 3 H 0.00 0.09 7.80 -2.39 -0.02 0.07 16 4 C -0.52 -30.05 8.84 25.60 0.23 -29.83 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -54.43 11.32 21.44 0.24 -54.19 16 8 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 9 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 N -0.69 -30.97 6.23 -495.46 -3.09 -34.06 16 13 C 0.06 2.34 5.48 86.30 0.47 2.82 16 14 C -0.09 -2.81 5.44 30.59 0.17 -2.64 16 15 C -0.03 -0.88 5.79 29.85 0.17 -0.70 16 16 C 0.07 1.70 6.49 43.10 0.28 1.98 16 17 C -0.29 -5.62 10.72 21.99 0.24 -5.39 16 18 C 0.07 1.01 11.99 83.54 1.00 2.01 16 19 N -0.48 -8.64 7.36 -57.59 -0.42 -9.06 16 20 H 0.45 5.05 8.96 -213.33 -1.91 3.13 16 21 N -0.34 -9.33 12.67 -47.39 -0.60 -9.93 16 22 H 0.03 1.51 8.13 -2.39 -0.02 1.49 16 23 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 24 H 0.03 1.22 7.45 -2.39 -0.02 1.20 16 25 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 26 H 0.33 13.88 8.47 -89.70 -0.76 13.12 16 27 H 0.03 0.95 7.44 -2.39 -0.02 0.93 16 28 H 0.05 2.05 8.05 -2.39 -0.02 2.03 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 2.09 8.12 -2.38 -0.02 2.07 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.22 0.82 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -69.55 287.17 0.34 -69.20 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -1.58 Total: 17.36 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 3.76 Total: -26.49 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -3.87 Total: -107.23 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.55 0.34 -69.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379663509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.371 kcal (2) G-P(sol) polarization free energy of solvation -69.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds