Wall clock time and date at job start Mon Mar 30 2020 02:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36895 * 125.31365 * 2 1 4 4 C 1.34291 * 109.51031 * 179.97438 * 3 2 1 5 5 C 1.46748 * 107.47580 * 0.02562 * 4 3 2 6 6 N 1.30890 * 126.85297 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99766 * 0.02562 * 6 5 4 8 8 C 1.53006 * 109.46995 * 120.00385 * 7 6 5 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47131 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47188 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99966 * 180.02562 * 11 10 9 14 14 N 1.31505 * 119.99945 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47418 * 89.99714 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99774 * 15 13 11 18 18 H 1.48501 * 109.47296 * 329.99817 * 15 13 11 19 19 N 1.38437 * 106.29888 * 0.25855 * 5 4 3 20 20 H 0.96997 * 126.32678 * 179.70459 * 19 5 4 21 21 H 1.09000 * 109.46711 * 90.02325 * 1 2 3 22 22 H 1.08995 * 109.47173 * 210.02282 * 1 2 3 23 23 H 1.09001 * 109.47208 * 330.02359 * 1 2 3 24 24 H 1.07993 * 125.24243 * 0.02562 * 3 2 1 25 25 H 1.07995 * 126.26631 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47464 * 0.02562 * 7 6 5 27 27 H 1.09001 * 109.47459 * 240.00362 * 7 6 5 28 28 H 1.09001 * 109.47002 * 299.99701 * 8 7 6 29 29 H 1.08993 * 109.46955 * 60.00138 * 8 7 6 30 30 H 1.09001 * 109.47289 * 299.99953 * 9 8 7 31 31 H 1.09004 * 109.47261 * 59.99697 * 9 8 7 32 32 H 1.09001 * 109.46997 * 299.99574 * 10 9 8 33 33 H 1.08992 * 109.47534 * 59.99520 * 10 9 8 34 34 H 0.97007 * 119.99787 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2563 1.1171 0.0000 4 6 3.5484 0.7513 0.0006 5 6 3.5913 -0.7155 0.0003 6 7 4.6611 -1.4696 0.0003 7 6 5.9907 -0.8547 0.0010 8 6 6.7560 -1.2959 1.2502 9 6 8.1444 -0.6532 1.2513 10 6 8.9100 -1.0949 2.5002 11 6 10.2773 -0.4613 2.5016 12 1 10.5711 0.1909 1.6925 13 6 11.1536 -0.7151 3.5354 14 7 10.7961 -1.5097 4.5204 15 14 12.8487 0.0697 3.5368 16 1 12.7885 1.3769 4.2388 17 1 13.8073 -0.8237 4.2355 18 1 13.2981 0.2799 2.1371 19 7 2.2745 -1.1426 -0.0064 20 1 1.9690 -2.0633 -0.0122 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3634 0.8902 0.5135 24 1 1.8968 2.1354 0.0004 25 1 4.4003 1.4152 0.0011 26 1 5.8891 0.2306 0.0020 27 1 6.5365 -1.1679 -0.8890 28 1 6.2103 -0.9826 2.1402 29 1 6.8577 -2.3811 1.2496 30 1 8.6904 -0.9661 0.3613 31 1 8.0424 0.4321 1.2521 32 1 8.3642 -0.7823 3.3904 33 1 9.0119 -2.1801 2.4990 34 1 11.4125 -1.6879 5.2479 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385330361.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:18 Heat of formation + Delta-G solvation = 84.477046 kcal Electronic energy + Delta-G solvation = -14261.825731 eV Core-core repulsion = 11810.835432 eV Total energy + Delta-G solvation = -2450.990299 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.55897 -35.92006 -34.05589 -32.47153 -31.41743 -31.09858 -28.14599 -25.61844 -24.28587 -21.80356 -21.66292 -19.89739 -19.67238 -17.67316 -16.08007 -15.55071 -15.24390 -14.95428 -14.40059 -14.16346 -13.65761 -13.62211 -13.30870 -12.75207 -12.53497 -12.19619 -11.68916 -11.50487 -10.91499 -10.53122 -10.37620 -10.32522 -10.12072 -9.46101 -9.42226 -9.10039 -8.88800 -8.62842 -8.22491 -6.89076 -5.87642 -3.89367 1.66954 1.75897 3.30805 3.39521 3.45033 3.49281 3.77156 4.52692 4.55942 4.60295 4.77274 4.99381 5.11259 5.47446 5.59788 5.67128 5.82673 5.96786 6.12782 6.25489 6.43085 6.56889 6.80246 6.84016 7.06539 7.20863 7.34811 7.37352 7.68408 7.83867 8.02049 8.15255 8.57991 8.61319 9.18541 9.73686 11.23794 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.069689 B = 0.003747 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.688575 B = 7470.732755 C = 7533.546374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.421 5.421 3 C 0.136 3.864 4 C -0.312 4.312 5 C 0.414 3.586 6 N -0.617 5.617 7 C 0.080 3.920 8 C -0.108 4.108 9 C -0.109 4.109 10 C 0.021 3.979 11 C -0.517 4.517 12 H 0.054 0.946 13 C 0.054 3.946 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 N -0.524 5.524 20 H 0.439 0.561 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.090 0.910 24 H 0.179 0.821 25 H 0.156 0.844 26 H 0.036 0.964 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.014 0.986 33 H 0.015 0.985 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.898 5.279 -9.737 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.217 5.217 3 C 0.005 3.995 4 C -0.346 4.346 5 C 0.141 3.859 6 N -0.348 5.348 7 C -0.050 4.050 8 C -0.147 4.147 9 C -0.147 4.147 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.719 3.281 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 N -0.260 5.260 20 H 0.285 0.715 21 H 0.080 0.920 22 H 0.095 0.905 23 H 0.108 0.892 24 H 0.196 0.804 25 H 0.173 0.827 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.033 0.967 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.867 4.214 -9.582 25.150 hybrid contribution 0.813 0.811 0.154 1.159 sum -22.054 5.025 -9.428 24.506 Atomic orbital electron populations 1.21780 0.74432 1.04251 1.02507 1.45871 1.02623 0.97205 1.76017 1.21990 0.90756 0.90434 0.96280 1.22587 0.96742 0.94993 1.20327 1.20305 0.84718 0.88727 0.92139 1.72018 0.97108 1.34222 1.31471 1.21858 0.87968 0.96338 0.98869 1.21620 0.96137 1.00980 0.95933 1.21604 0.93564 0.98822 1.00690 1.19094 0.94126 0.96569 0.91857 1.21324 0.99417 1.28147 1.06668 0.92743 1.25044 0.98491 0.95394 0.95715 1.69980 1.36032 1.36918 1.10762 0.86613 0.84326 0.79114 0.78055 1.20752 1.21301 1.19896 1.43738 1.00102 1.00286 1.81903 0.71498 0.92004 0.90509 0.89189 0.80434 0.82685 0.94608 0.91651 0.93145 0.92201 0.93515 0.93711 0.96796 0.96659 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.41 11.43 59.84 0.68 1.09 16 2 N -0.42 -3.57 4.04 -67.92 -0.27 -3.85 16 3 C 0.14 1.17 11.38 -16.68 -0.19 0.98 16 4 C -0.31 -3.89 10.08 -37.54 -0.38 -4.26 16 5 C 0.41 6.21 8.29 -153.74 -1.28 4.94 16 6 N -0.62 -11.09 10.65 -58.59 -0.62 -11.71 16 7 C 0.08 1.45 6.35 -4.04 -0.03 1.43 16 8 C -0.11 -2.24 5.54 -26.73 -0.15 -2.39 16 9 C -0.11 -2.49 5.15 -26.73 -0.14 -2.63 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -15.56 9.11 -34.44 -0.31 -15.87 16 12 H 0.05 1.58 7.74 -52.49 -0.41 1.18 16 13 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -28.32 13.29 55.43 0.74 -27.58 16 15 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 18 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 19 N -0.52 -5.97 7.40 32.40 0.24 -5.73 16 20 H 0.44 4.15 8.96 -182.65 -1.64 2.52 16 21 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 22 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 23 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 24 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 25 H 0.16 1.88 6.91 -52.49 -0.36 1.51 16 26 H 0.04 0.61 5.99 -51.93 -0.31 0.29 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 291.38 15.07 4.39 4.39 Total: -1.00 -36.45 291.38 -9.08 -45.53 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -6.50 Total: -3.83 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.02 Total: -14.74 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.08 Total: -48.87 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -36.45 -9.08 -45.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385330361.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.004 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds