Wall clock time and date at job start Mon Mar 30 2020 02:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36895 * 125.31365 * 2 1 4 4 C 1.34291 * 109.51031 * 179.97438 * 3 2 1 5 5 C 1.46748 * 107.47580 * 0.02562 * 4 3 2 6 6 N 1.30890 * 126.85297 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99766 * 0.02562 * 6 5 4 8 8 C 1.53006 * 109.46995 * 120.00385 * 7 6 5 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47131 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47188 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99966 * 180.02562 * 11 10 9 14 14 N 1.31505 * 119.99945 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47418 * 89.99714 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99774 * 15 13 11 18 18 H 1.48501 * 109.47296 * 329.99817 * 15 13 11 19 19 N 1.38437 * 106.29888 * 0.25855 * 5 4 3 20 20 H 0.96997 * 126.32678 * 179.70459 * 19 5 4 21 21 H 1.09000 * 109.46711 * 90.02325 * 1 2 3 22 22 H 1.08995 * 109.47173 * 210.02282 * 1 2 3 23 23 H 1.09001 * 109.47208 * 330.02359 * 1 2 3 24 24 H 1.07993 * 125.24243 * 0.02562 * 3 2 1 25 25 H 1.07995 * 126.26631 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47464 * 0.02562 * 7 6 5 27 27 H 1.09001 * 109.47459 * 240.00362 * 7 6 5 28 28 H 1.09001 * 109.47002 * 299.99701 * 8 7 6 29 29 H 1.08993 * 109.46955 * 60.00138 * 8 7 6 30 30 H 1.09001 * 109.47289 * 299.99953 * 9 8 7 31 31 H 1.09004 * 109.47261 * 59.99697 * 9 8 7 32 32 H 1.09001 * 109.46997 * 299.99574 * 10 9 8 33 33 H 1.08992 * 109.47534 * 59.99520 * 10 9 8 34 34 H 0.97007 * 119.99787 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2563 1.1171 0.0000 4 6 3.5484 0.7513 0.0006 5 6 3.5913 -0.7155 0.0003 6 7 4.6611 -1.4696 0.0003 7 6 5.9907 -0.8547 0.0010 8 6 6.7560 -1.2959 1.2502 9 6 8.1444 -0.6532 1.2513 10 6 8.9100 -1.0949 2.5002 11 6 10.2773 -0.4613 2.5016 12 1 10.5711 0.1909 1.6925 13 6 11.1536 -0.7151 3.5354 14 7 10.7961 -1.5097 4.5204 15 14 12.8487 0.0697 3.5368 16 1 12.7885 1.3769 4.2388 17 1 13.8073 -0.8237 4.2355 18 1 13.2981 0.2799 2.1371 19 7 2.2745 -1.1426 -0.0064 20 1 1.9690 -2.0633 -0.0122 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3634 0.8902 0.5135 24 1 1.8968 2.1354 0.0004 25 1 4.4003 1.4152 0.0011 26 1 5.8891 0.2306 0.0020 27 1 6.5365 -1.1679 -0.8890 28 1 6.2103 -0.9826 2.1402 29 1 6.8577 -2.3811 1.2496 30 1 8.6904 -0.9661 0.3613 31 1 8.0424 0.4321 1.2521 32 1 8.3642 -0.7823 3.3904 33 1 9.0119 -2.1801 2.4990 34 1 11.4125 -1.6879 5.2479 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385330361.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:17 Heat of formation + Delta-G solvation = 58.906509 kcal Electronic energy + Delta-G solvation = -14262.934553 eV Core-core repulsion = 11810.835432 eV Total energy + Delta-G solvation = -2452.099121 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42177 -37.38474 -35.73563 -34.22288 -32.44200 -32.16663 -29.87570 -26.84183 -25.71117 -23.50674 -22.47520 -21.75668 -20.81289 -18.52768 -18.41217 -16.53034 -16.44849 -16.18266 -16.03673 -15.46130 -14.69917 -14.66267 -14.38267 -14.11672 -13.69661 -13.60266 -13.24641 -13.16265 -12.83316 -12.37325 -12.22258 -12.18524 -11.46117 -11.34930 -11.21587 -10.92405 -10.55137 -10.26968 -9.81661 -8.19006 -7.86561 -6.31035 0.91702 0.94660 1.39944 1.43031 1.54398 2.25414 2.42479 2.98133 3.13372 3.89840 4.02244 4.17767 4.25944 4.43279 4.56487 4.62443 4.67185 4.80437 4.81697 4.93587 4.98372 5.06060 5.16940 5.28951 5.34847 5.36833 5.55267 5.77256 5.86275 6.01959 6.26068 6.42347 6.82406 6.85961 7.38081 7.53515 8.93747 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.069689 B = 0.003747 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.688575 B = 7470.732755 C = 7533.546374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.410 5.410 3 C 0.176 3.824 4 C -0.373 4.373 5 C 0.406 3.594 6 N -0.677 5.677 7 C 0.094 3.906 8 C -0.095 4.095 9 C -0.094 4.094 10 C 0.024 3.976 11 C -0.544 4.544 12 H 0.063 0.937 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.972 3.028 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.261 1.261 19 N -0.523 5.523 20 H 0.445 0.555 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.122 0.878 24 H 0.233 0.767 25 H 0.149 0.851 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.054 0.946 32 H -0.013 1.013 33 H -0.014 1.014 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.595 7.389 -10.590 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.204 5.204 3 C 0.042 3.958 4 C -0.407 4.407 5 C 0.136 3.864 6 N -0.413 5.413 7 C -0.036 4.036 8 C -0.134 4.134 9 C -0.132 4.132 10 C -0.013 4.013 11 C -0.582 4.582 12 H 0.081 0.919 13 C -0.203 4.203 14 N -0.577 5.577 15 Si 0.796 3.204 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.186 1.186 19 N -0.258 5.258 20 H 0.292 0.708 21 H 0.097 0.903 22 H 0.104 0.896 23 H 0.140 0.860 24 H 0.249 0.751 25 H 0.167 0.833 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.005 0.995 33 H 0.004 0.996 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.662 6.302 -10.450 27.516 hybrid contribution 1.023 0.179 0.436 1.126 sum -23.640 6.481 -10.014 26.479 Atomic orbital electron populations 1.22277 0.71037 1.06313 1.04299 1.46595 1.04234 0.96101 1.73468 1.22778 0.89388 0.92306 0.91340 1.22548 0.98695 0.93522 1.25933 1.20702 0.85250 0.90304 0.90183 1.71942 0.97334 1.34972 1.37017 1.21536 0.88779 0.96658 0.96675 1.21445 0.95109 0.99593 0.97251 1.21408 0.94233 0.99406 0.98184 1.19014 0.94468 0.94641 0.93214 1.21740 1.00378 1.28759 1.07360 0.91906 1.26102 1.03467 0.95743 0.94985 1.70129 1.37934 1.38147 1.11525 0.85346 0.78062 0.78256 0.78759 1.19467 1.20625 1.18560 1.43950 0.99878 1.01836 1.80091 0.70758 0.90262 0.89643 0.85955 0.75128 0.83302 0.93789 0.92220 0.94468 0.93876 0.92905 0.92710 0.99506 0.99580 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.26 11.43 127.77 1.46 1.72 16 2 N -0.41 -5.52 4.04 -368.79 -1.49 -7.01 16 3 C 0.18 2.40 11.38 83.00 0.94 3.34 16 4 C -0.37 -8.93 10.08 23.59 0.24 -8.69 16 5 C 0.41 12.26 8.29 135.71 1.13 13.38 16 6 N -0.68 -25.37 10.65 -339.29 -3.61 -28.99 16 7 C 0.09 3.59 6.35 86.38 0.55 4.13 16 8 C -0.10 -4.17 5.54 30.60 0.17 -4.00 16 9 C -0.09 -4.47 5.15 30.59 0.16 -4.32 16 10 C 0.02 1.40 4.97 29.85 0.15 1.55 16 11 C -0.54 -33.37 9.11 25.60 0.23 -33.14 16 12 H 0.06 3.66 7.74 -2.91 -0.02 3.63 16 13 C -0.01 -0.36 5.46 84.66 0.46 0.11 16 14 N -0.94 -60.47 13.29 21.45 0.28 -60.19 16 15 Si 0.97 46.36 29.54 68.60 2.03 48.39 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 19 N -0.52 -11.24 7.40 -51.42 -0.38 -11.62 16 20 H 0.44 8.03 8.96 -213.37 -1.91 6.12 16 21 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 22 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 23 H 0.12 -0.33 8.14 -2.39 -0.02 -0.35 16 24 H 0.23 0.58 8.06 -2.91 -0.02 0.55 16 25 H 0.15 3.63 6.91 -2.91 -0.02 3.61 16 26 H 0.04 1.55 5.99 -2.39 -0.01 1.53 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.05 2.47 8.14 -2.38 -0.02 2.45 16 32 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -82.62 291.38 1.48 -81.14 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -0.84 Total: 4.18 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 5.49 Total: -25.91 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -5.20 Total: -107.81 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -82.62 1.48 -81.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385330361.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.051 kcal (2) G-P(sol) polarization free energy of solvation -82.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds