Wall clock time and date at job start Mon Mar 30 2020 03:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00035 * 2 1 4 4 H 1.48494 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47023 * 299.99505 * 3 2 1 6 6 H 1.48505 * 109.47183 * 59.99322 * 3 2 1 7 7 C 1.37875 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00592 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47301 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47136 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47014 * 179.97438 * 12 11 10 14 14 C 1.46900 * 111.00130 * 179.97438 * 13 12 11 15 15 H 1.09005 * 109.80980 * 34.47778 * 14 13 12 16 16 C 1.53018 * 109.64344 * 273.94496 * 14 13 12 17 17 C 1.50072 * 110.09204 * 190.68513 * 16 14 13 18 18 C 1.29443 * 124.07412 * 17.59192 * 17 16 14 19 19 C 1.50070 * 124.07366 * 359.00582 * 18 17 16 20 20 C 1.53031 * 110.14643 * 17.39440 * 19 18 17 21 21 H 0.97002 * 120.00088 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46930 * 59.99597 * 9 7 2 23 23 H 1.09004 * 109.47266 * 300.00303 * 9 7 2 24 24 H 1.08999 * 109.47107 * 59.99878 * 10 9 7 25 25 H 1.09004 * 109.47202 * 300.00235 * 10 9 7 26 26 H 1.09005 * 109.46887 * 60.00138 * 11 10 9 27 27 H 1.08995 * 109.47025 * 300.00396 * 11 10 9 28 28 H 1.08999 * 109.46899 * 59.99996 * 12 11 10 29 29 H 1.09003 * 109.47487 * 299.99709 * 12 11 10 30 30 H 1.00897 * 111.00358 * 303.95421 * 13 12 11 31 31 H 1.08997 * 109.36158 * 311.08642 * 16 14 13 32 32 H 1.09002 * 109.36095 * 70.81207 * 16 14 13 33 33 H 1.08005 * 117.96869 * 197.35042 * 17 16 14 34 34 H 1.08002 * 117.96781 * 179.29694 * 18 17 16 35 35 H 1.08997 * 109.35957 * 137.60317 * 19 18 17 36 36 H 1.09004 * 109.35788 * 257.32815 * 19 18 17 37 37 H 1.08996 * 109.63819 * 70.24884 * 20 19 18 38 38 H 1.09001 * 109.63955 * 190.88160 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 7 1.7400 -7.4221 0.0018 14 6 2.6645 -8.5638 0.0018 15 1 3.5540 -8.3189 0.5824 16 6 3.0652 -8.9012 -1.4359 17 6 3.7936 -10.2127 -1.4738 18 6 3.7606 -11.0884 -0.5211 19 6 3.0066 -10.9053 0.7635 20 6 1.9714 -9.7885 0.6124 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8712 -3.6039 0.8922 25 1 2.8726 -3.6047 -0.8877 26 1 0.8546 -5.0450 -0.8896 27 1 0.8526 -5.0447 0.8904 28 1 3.1005 -6.0922 0.8923 29 1 3.1018 -6.0922 -0.8877 30 1 1.1033 -7.4721 0.7829 31 1 2.1706 -8.9630 -2.0554 32 1 3.7187 -8.1188 -1.8220 33 1 4.3787 -10.4420 -2.3522 34 1 4.3136 -12.0060 -0.6572 35 1 2.4999 -11.8353 1.0208 36 1 3.7051 -10.6426 1.5581 37 1 1.1678 -10.1204 -0.0450 38 1 1.5657 -9.5302 1.5906 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385334115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:19 Heat of formation + Delta-G solvation = -21.276782 kcal Electronic energy + Delta-G solvation = -14671.377601 eV Core-core repulsion = 12319.341815 eV Total energy + Delta-G solvation = -2352.035786 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.01878 -35.96473 -33.90609 -32.14516 -30.98254 -29.66226 -27.30894 -24.41047 -23.21443 -21.59859 -21.19751 -19.93223 -17.97212 -16.47287 -16.12915 -15.60946 -14.84520 -14.58729 -14.34349 -13.76044 -13.43693 -13.10125 -12.91452 -12.48880 -12.39164 -12.28964 -11.67115 -11.41617 -11.20913 -10.95469 -10.71667 -10.51519 -10.45844 -10.38380 -10.36079 -9.59822 -9.22188 -9.14954 -8.95878 -8.35528 -8.30312 -5.95616 -3.97684 2.12221 3.33333 3.40533 3.44997 4.11583 4.49600 4.52848 4.63084 4.91270 5.12926 5.16254 5.35585 5.37011 5.39905 5.44342 5.50270 5.60344 5.65166 5.79756 5.89598 5.96306 5.97376 6.09652 6.21392 6.32617 6.48922 6.55906 6.77880 6.86564 7.00653 7.10860 7.27850 7.47488 7.74134 7.90048 8.05848 8.48791 9.10143 9.66118 11.15787 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.074000 B = 0.003617 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.288481 B = 7738.988263 C = 7893.230683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.060 3.940 13 N -0.688 5.688 14 C 0.086 3.914 15 H 0.044 0.956 16 C -0.083 4.083 17 C -0.148 4.148 18 C -0.166 4.166 19 C -0.088 4.088 20 C -0.122 4.122 21 H 0.259 0.741 22 H 0.016 0.984 23 H 0.014 0.986 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.340 0.660 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -21.018 0.386 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.069 4.069 13 N -0.319 5.319 14 C -0.024 4.024 15 H 0.062 0.938 16 C -0.120 4.120 17 C -0.166 4.166 18 C -0.184 4.184 19 C -0.125 4.125 20 C -0.159 4.159 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.159 0.841 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.410 -20.902 -0.296 21.593 hybrid contribution 0.841 0.959 0.851 1.533 sum 6.251 -19.943 0.555 20.907 Atomic orbital electron populations 1.69981 1.06041 1.26384 1.51173 1.25039 0.94848 0.99239 0.95462 0.86556 0.80126 0.83897 0.77544 1.19768 1.21024 1.21057 1.21338 0.93058 0.91227 1.50123 0.92726 1.19100 0.94039 0.91362 0.97155 1.21590 0.99078 0.94008 1.00048 1.21637 0.97883 0.93862 1.01960 1.22116 0.96188 0.88582 1.00015 1.60514 1.19774 1.01555 1.50077 1.21540 0.94411 0.90410 0.95994 0.93793 1.20478 1.00041 0.94452 0.97039 1.22146 0.99744 0.95924 0.98798 1.22015 1.01097 0.99219 0.96078 1.20423 0.97335 0.98804 0.95987 1.21803 0.98313 0.94945 1.00885 0.93119 0.96591 0.96743 0.93717 0.93471 0.91665 0.92783 0.95660 0.91338 0.84142 0.89775 0.91245 0.87986 0.88186 0.91035 0.91104 0.90897 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 11 C -0.12 -2.02 5.47 -26.73 -0.15 -2.16 16 12 C 0.06 0.87 5.49 -3.83 -0.02 0.85 16 13 N -0.69 -8.79 6.32 -106.50 -0.67 -9.47 16 14 C 0.09 0.96 2.54 -67.50 -0.17 0.79 16 15 H 0.04 0.52 7.79 -51.93 -0.40 0.12 16 16 C -0.08 -0.90 5.59 -28.18 -0.16 -1.06 16 17 C -0.15 -1.41 9.80 -35.90 -0.35 -1.76 16 18 C -0.17 -1.47 9.80 -35.90 -0.35 -1.82 16 19 C -0.09 -0.73 6.12 -28.17 -0.17 -0.90 16 20 C -0.12 -1.13 5.36 -26.51 -0.14 -1.28 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 29 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 30 H 0.34 4.05 8.28 -39.29 -0.33 3.73 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.78 7.83 -51.93 -0.41 0.38 16 33 H 0.10 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 38 H 0.06 0.56 8.00 -51.93 -0.42 0.14 16 LS Contribution 306.63 15.07 4.62 4.62 Total: -1.00 -30.32 306.63 -9.53 -39.84 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.99 Total: -1.93 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -2.20 Total: -23.29 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.06 Total: -36.25 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.32 -9.53 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385334115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.567 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds