Wall clock time and date at job start Mon Mar 30 2020 03:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00035 * 2 1 4 4 H 1.48494 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47023 * 299.99505 * 3 2 1 6 6 H 1.48505 * 109.47183 * 59.99322 * 3 2 1 7 7 C 1.37875 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00592 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47301 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47136 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47014 * 179.97438 * 12 11 10 14 14 C 1.46900 * 111.00130 * 179.97438 * 13 12 11 15 15 H 1.09005 * 109.80980 * 34.47778 * 14 13 12 16 16 C 1.53018 * 109.64344 * 273.94496 * 14 13 12 17 17 C 1.50072 * 110.09204 * 190.68513 * 16 14 13 18 18 C 1.29443 * 124.07412 * 17.59192 * 17 16 14 19 19 C 1.50070 * 124.07366 * 359.00582 * 18 17 16 20 20 C 1.53031 * 110.14643 * 17.39440 * 19 18 17 21 21 H 0.97002 * 120.00088 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46930 * 59.99597 * 9 7 2 23 23 H 1.09004 * 109.47266 * 300.00303 * 9 7 2 24 24 H 1.08999 * 109.47107 * 59.99878 * 10 9 7 25 25 H 1.09004 * 109.47202 * 300.00235 * 10 9 7 26 26 H 1.09005 * 109.46887 * 60.00138 * 11 10 9 27 27 H 1.08995 * 109.47025 * 300.00396 * 11 10 9 28 28 H 1.08999 * 109.46899 * 59.99996 * 12 11 10 29 29 H 1.09003 * 109.47487 * 299.99709 * 12 11 10 30 30 H 1.00897 * 111.00358 * 303.95421 * 13 12 11 31 31 H 1.08997 * 109.36158 * 311.08642 * 16 14 13 32 32 H 1.09002 * 109.36095 * 70.81207 * 16 14 13 33 33 H 1.08005 * 117.96869 * 197.35042 * 17 16 14 34 34 H 1.08002 * 117.96781 * 179.29694 * 18 17 16 35 35 H 1.08997 * 109.35957 * 137.60317 * 19 18 17 36 36 H 1.09004 * 109.35788 * 257.32815 * 19 18 17 37 37 H 1.08996 * 109.63819 * 70.24884 * 20 19 18 38 38 H 1.09001 * 109.63955 * 190.88160 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 7 1.7400 -7.4221 0.0018 14 6 2.6645 -8.5638 0.0018 15 1 3.5540 -8.3189 0.5824 16 6 3.0652 -8.9012 -1.4359 17 6 3.7936 -10.2127 -1.4738 18 6 3.7606 -11.0884 -0.5211 19 6 3.0066 -10.9053 0.7635 20 6 1.9714 -9.7885 0.6124 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8712 -3.6039 0.8922 25 1 2.8726 -3.6047 -0.8877 26 1 0.8546 -5.0450 -0.8896 27 1 0.8526 -5.0447 0.8904 28 1 3.1005 -6.0922 0.8923 29 1 3.1018 -6.0922 -0.8877 30 1 1.1033 -7.4721 0.7829 31 1 2.1706 -8.9630 -2.0554 32 1 3.7187 -8.1188 -1.8220 33 1 4.3787 -10.4420 -2.3522 34 1 4.3136 -12.0060 -0.6572 35 1 2.4999 -11.8353 1.0208 36 1 3.7051 -10.6426 1.5581 37 1 1.1678 -10.1204 -0.0450 38 1 1.5657 -9.5302 1.5906 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385334115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:19 Heat of formation + Delta-G solvation = -38.719204 kcal Electronic energy + Delta-G solvation = -14672.133961 eV Core-core repulsion = 12319.341815 eV Total energy + Delta-G solvation = -2352.792146 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85299 -37.27549 -35.59332 -33.93978 -31.74474 -30.99624 -28.80697 -26.10343 -24.17212 -22.85668 -22.35430 -21.62217 -18.73802 -18.43395 -17.23008 -16.72782 -16.52171 -15.86604 -15.70681 -14.73123 -14.61203 -14.23202 -14.13258 -13.91681 -13.54558 -13.40892 -13.17030 -12.94888 -12.84412 -12.35284 -12.29465 -12.12904 -11.84596 -11.52591 -11.37303 -11.28828 -11.20048 -10.90701 -10.56208 -9.85923 -9.37935 -8.20200 -6.31761 1.39442 1.39984 1.42635 1.53593 2.40783 3.12444 3.13035 3.75932 3.89204 4.09920 4.13268 4.24302 4.40027 4.46433 4.49660 4.57723 4.62146 4.70734 4.73699 4.84488 4.91966 5.00752 5.02131 5.10643 5.22741 5.26012 5.27110 5.33947 5.38934 5.55103 5.77641 5.78520 5.86713 6.06720 6.14162 6.25757 6.49031 6.85952 7.37629 8.91925 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.074000 B = 0.003617 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.288481 B = 7738.988263 C = 7893.230683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.105 4.105 12 C 0.072 3.928 13 N -0.693 5.693 14 C 0.086 3.914 15 H 0.040 0.960 16 C -0.082 4.082 17 C -0.164 4.164 18 C -0.162 4.162 19 C -0.089 4.089 20 C -0.118 4.118 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.010 1.010 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.346 0.654 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.936 -21.815 0.821 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.136 4.136 11 C -0.143 4.143 12 C -0.057 4.057 13 N -0.324 5.324 14 C -0.024 4.024 15 H 0.058 0.942 16 C -0.119 4.119 17 C -0.182 4.182 18 C -0.179 4.179 19 C -0.126 4.126 20 C -0.156 4.156 21 H 0.072 0.928 22 H 0.008 0.992 23 H 0.009 0.991 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.165 0.835 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.714 -21.720 0.141 22.734 hybrid contribution 0.393 1.172 0.720 1.431 sum 7.107 -20.547 0.861 21.759 Atomic orbital electron populations 1.70112 1.07850 1.27722 1.51801 1.26031 0.95819 1.03509 0.94731 0.85369 0.79049 0.78601 0.77847 1.18553 1.20289 1.20252 1.21779 0.93566 0.92551 1.50380 0.92232 1.19027 0.94503 0.93273 0.94645 1.21404 0.98002 0.93771 1.00387 1.21461 0.98016 0.93280 1.01522 1.21872 0.95256 0.88335 1.00236 1.60466 1.20141 1.01297 1.50542 1.21587 0.94063 0.90429 0.96278 0.94218 1.20433 0.99644 0.95190 0.96664 1.22167 1.00643 0.95581 0.99858 1.22260 1.00441 0.99428 0.95820 1.20482 0.97196 0.99059 0.95908 1.21781 0.98397 0.94420 1.01006 0.92754 0.99245 0.99145 0.93149 0.93197 0.92656 0.92706 0.95114 0.91456 0.83527 0.90787 0.92158 0.87081 0.86535 0.89362 0.90497 0.91333 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.23 13.29 21.45 0.28 -57.95 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 11 C -0.10 -3.65 5.47 30.59 0.17 -3.48 16 12 C 0.07 2.04 5.49 86.30 0.47 2.51 16 13 N -0.69 -17.04 6.32 -490.85 -3.10 -20.14 16 14 C 0.09 1.81 2.54 45.05 0.11 1.93 16 15 H 0.04 0.88 7.79 -2.38 -0.02 0.87 16 16 C -0.08 -1.72 5.59 29.66 0.17 -1.56 16 17 C -0.16 -2.91 9.80 27.04 0.27 -2.65 16 18 C -0.16 -2.49 9.80 27.04 0.27 -2.23 16 19 C -0.09 -1.25 6.12 29.66 0.18 -1.07 16 20 C -0.12 -1.99 5.36 30.74 0.16 -1.83 16 21 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 22 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 23 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 24 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.03 0.84 8.06 -2.39 -0.02 0.82 16 29 H 0.07 1.93 7.76 -2.39 -0.02 1.91 16 30 H 0.35 7.83 8.28 -89.70 -0.74 7.08 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.35 7.83 -2.39 -0.02 1.33 16 33 H 0.11 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 38 H 0.07 1.11 8.00 -2.39 -0.02 1.09 16 Total: -1.00 -64.67 306.63 2.26 -62.41 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.25 Total: 11.04 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 2.80 Total: -42.49 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -2.82 Total: -78.09 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.67 2.26 -62.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385334115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.693 kcal (2) G-P(sol) polarization free energy of solvation -64.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds