Wall clock time and date at job start Mon Mar 30 2020 02:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35978 * 126.06959 * 2 1 4 4 C 1.35705 * 107.55039 * 180.28516 * 3 2 1 5 5 N 1.40794 * 126.06791 * 179.71766 * 4 3 2 6 6 C 1.46497 * 120.00447 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.47332 * 179.97438 * 6 5 4 8 8 C 1.53008 * 109.47057 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47057 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47272 * 180.02562 * 9 8 7 11 11 H 1.07995 * 119.99612 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00149 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99973 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00023 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47197 * 59.99728 * 14 12 10 16 16 H 1.48494 * 109.47489 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47064 * 300.00154 * 14 12 10 18 18 C 1.40224 * 107.86523 * 359.58143 * 4 3 2 19 19 N 1.30858 * 108.36224 * 0.42498 * 18 4 3 20 20 H 1.09000 * 109.46987 * 89.99887 * 1 2 3 21 21 H 1.08997 * 109.47049 * 210.00271 * 1 2 3 22 22 H 1.09000 * 109.47423 * 330.00173 * 1 2 3 23 23 H 1.08002 * 126.22121 * 0.02562 * 3 2 1 24 24 H 0.97003 * 119.99670 * 359.97438 * 5 4 3 25 25 H 1.09004 * 109.46816 * 299.99862 * 6 5 4 26 26 H 1.08999 * 109.47021 * 59.99101 * 6 5 4 27 27 H 1.08998 * 109.47003 * 299.99358 * 7 6 5 28 28 H 1.08999 * 109.47690 * 59.99647 * 7 6 5 29 29 H 1.08998 * 109.46899 * 299.99678 * 8 7 6 30 30 H 1.08999 * 109.46950 * 59.99449 * 8 7 6 31 31 H 1.09004 * 109.47168 * 300.00038 * 9 8 7 32 32 H 1.08999 * 109.47690 * 59.99903 * 9 8 7 33 33 H 0.96997 * 120.00131 * 179.97438 * 13 12 10 34 34 H 1.08000 * 125.81783 * 180.12847 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0991 0.0000 4 6 3.5523 0.6681 -0.0064 5 7 4.6997 1.4840 -0.0143 6 6 6.0319 0.8745 -0.0212 7 6 7.0957 1.9740 -0.0296 8 6 8.4871 1.3375 -0.0362 9 6 9.5509 2.4370 -0.0452 10 6 10.9213 1.8100 -0.0524 11 1 11.0232 0.7349 -0.0503 12 6 12.0450 2.6090 -0.0617 13 7 11.9208 3.9183 -0.0648 14 14 13.7435 1.8319 -0.0698 15 1 13.8950 0.9857 -1.2807 16 1 14.7761 2.8990 -0.0787 17 1 13.9099 0.9929 1.1442 18 6 3.5363 -0.7340 -0.0007 19 7 2.2898 -1.1321 -0.0004 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.9370 2.1279 0.0004 24 1 4.6082 2.4496 -0.0158 25 1 6.1537 0.2574 0.8690 26 1 6.1433 0.2548 -0.9109 27 1 6.9738 2.5908 -0.9200 28 1 6.9845 2.5941 0.8599 29 1 8.6088 0.7210 0.8544 30 1 8.5986 0.7171 -0.9255 31 1 9.4290 3.0532 -0.9361 32 1 9.4396 3.0577 0.8438 33 1 12.7113 4.4804 -0.0709 34 1 4.4048 -1.3760 -0.0017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385336353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:02 Heat of formation + Delta-G solvation = 61.944536 kcal Electronic energy + Delta-G solvation = -14159.360380 eV Core-core repulsion = 11707.392998 eV Total energy + Delta-G solvation = -2451.967382 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97827 -36.42486 -34.17168 -32.84635 -31.98005 -29.70169 -27.82316 -26.07468 -24.39467 -22.11461 -20.97313 -20.23775 -19.95583 -17.18139 -16.23105 -15.53112 -15.43480 -15.00530 -14.70935 -14.38124 -14.10044 -13.26306 -12.94960 -12.60377 -12.49824 -12.47134 -11.67143 -11.48452 -11.14613 -10.77224 -10.73813 -10.55855 -10.44730 -9.85947 -9.63726 -9.35021 -9.28462 -9.03595 -8.32253 -6.98132 -5.97655 -3.99901 1.87665 2.48238 3.01740 3.35082 3.39226 3.41898 3.80295 4.48141 4.57216 4.86867 4.96763 5.13740 5.20133 5.37932 5.39445 5.50189 5.60370 5.76316 5.85332 6.17986 6.18779 6.42697 6.48093 6.79089 6.91798 6.99273 7.15295 7.54610 7.68559 7.70356 7.85554 8.02759 8.07840 8.45779 9.07409 9.64055 11.13742 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.098123 B = 0.003493 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.287140 B = 8013.582170 C = 8262.505978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.381 5.381 3 C -0.043 4.043 4 C 0.073 3.927 5 N -0.745 5.745 6 C 0.135 3.865 7 C -0.128 4.128 8 C -0.107 4.107 9 C 0.021 3.979 10 C -0.521 4.521 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.010 3.990 19 N -0.281 5.281 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.168 0.832 24 H 0.396 0.604 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.261 0.739 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.650 -4.920 0.198 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.170 5.170 3 C -0.190 4.190 4 C -0.035 4.035 5 N -0.382 5.382 6 C 0.011 3.989 7 C -0.166 4.166 8 C -0.145 4.145 9 C -0.016 4.016 10 C -0.559 4.559 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.178 4.178 19 N -0.104 5.104 20 H 0.087 0.913 21 H 0.103 0.897 22 H 0.101 0.899 23 H 0.185 0.815 24 H 0.230 0.770 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -21.325 -5.893 0.197 22.125 hybrid contribution 1.501 0.827 -0.021 1.714 sum -19.824 -5.066 0.177 20.461 Atomic orbital electron populations 1.21690 0.74418 1.03977 1.02817 1.48008 1.05863 1.03197 1.59897 1.21623 0.89644 0.93047 1.14719 1.17820 0.87330 0.90816 1.07572 1.43998 1.01515 1.06487 1.86243 1.21317 0.81021 0.96390 1.00148 1.21826 0.95226 0.97516 1.01988 1.21557 0.92673 0.99842 1.00461 1.19091 0.92131 0.93233 0.97143 1.21254 0.91280 0.92945 1.50463 0.92729 1.25032 0.99272 0.94833 0.95385 1.69955 1.29515 1.03219 1.50957 0.86660 0.83895 0.78837 0.78623 1.20240 1.21323 1.20246 1.23570 0.95348 0.93506 1.05412 1.77156 1.01169 1.09062 1.23019 0.91326 0.89737 0.89875 0.81517 0.76962 0.93155 0.93165 0.92029 0.92031 0.93224 0.93228 0.96675 0.96677 0.92984 0.80269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.75 11.48 59.84 0.69 1.43 16 2 N -0.38 -4.35 4.04 -67.79 -0.27 -4.63 16 3 C -0.04 -0.49 11.57 -16.62 -0.19 -0.68 16 4 C 0.07 0.96 6.96 -83.90 -0.58 0.37 16 5 N -0.75 -9.59 5.80 -58.80 -0.34 -9.94 16 6 C 0.14 1.89 5.63 -4.05 -0.02 1.87 16 7 C -0.13 -2.07 5.33 -26.73 -0.14 -2.22 16 8 C -0.11 -2.16 5.15 -26.73 -0.14 -2.29 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 10 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 14 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.01 0.13 11.34 -17.22 -0.20 -0.06 16 19 N -0.28 -3.88 12.57 30.70 0.39 -3.49 16 20 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 21 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 24 H 0.40 4.60 8.60 -40.82 -0.35 4.25 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.18 2.10 7.90 -52.49 -0.41 1.69 16 LS Contribution 293.73 15.07 4.43 4.43 Total: -1.00 -32.69 293.73 -6.60 -39.29 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.38 Total: -1.13 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -1.14 Total: -14.86 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.51 Total: -44.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.69 -6.60 -39.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385336353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.236 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds