Wall clock time and date at job start Mon Mar 30 2020 02:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35978 * 126.06959 * 2 1 4 4 C 1.35705 * 107.55039 * 180.28516 * 3 2 1 5 5 N 1.40794 * 126.06791 * 179.71766 * 4 3 2 6 6 C 1.46497 * 120.00447 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.47332 * 179.97438 * 6 5 4 8 8 C 1.53008 * 109.47057 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47057 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47272 * 180.02562 * 9 8 7 11 11 H 1.07995 * 119.99612 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00149 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99973 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00023 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47197 * 59.99728 * 14 12 10 16 16 H 1.48494 * 109.47489 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47064 * 300.00154 * 14 12 10 18 18 C 1.40224 * 107.86523 * 359.58143 * 4 3 2 19 19 N 1.30858 * 108.36224 * 0.42498 * 18 4 3 20 20 H 1.09000 * 109.46987 * 89.99887 * 1 2 3 21 21 H 1.08997 * 109.47049 * 210.00271 * 1 2 3 22 22 H 1.09000 * 109.47423 * 330.00173 * 1 2 3 23 23 H 1.08002 * 126.22121 * 0.02562 * 3 2 1 24 24 H 0.97003 * 119.99670 * 359.97438 * 5 4 3 25 25 H 1.09004 * 109.46816 * 299.99862 * 6 5 4 26 26 H 1.08999 * 109.47021 * 59.99101 * 6 5 4 27 27 H 1.08998 * 109.47003 * 299.99358 * 7 6 5 28 28 H 1.08999 * 109.47690 * 59.99647 * 7 6 5 29 29 H 1.08998 * 109.46899 * 299.99678 * 8 7 6 30 30 H 1.08999 * 109.46950 * 59.99449 * 8 7 6 31 31 H 1.09004 * 109.47168 * 300.00038 * 9 8 7 32 32 H 1.08999 * 109.47690 * 59.99903 * 9 8 7 33 33 H 0.96997 * 120.00131 * 179.97438 * 13 12 10 34 34 H 1.08000 * 125.81783 * 180.12847 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0991 0.0000 4 6 3.5523 0.6681 -0.0064 5 7 4.6997 1.4840 -0.0143 6 6 6.0319 0.8745 -0.0212 7 6 7.0957 1.9740 -0.0296 8 6 8.4871 1.3375 -0.0362 9 6 9.5509 2.4370 -0.0452 10 6 10.9213 1.8100 -0.0524 11 1 11.0232 0.7349 -0.0503 12 6 12.0450 2.6090 -0.0617 13 7 11.9208 3.9183 -0.0648 14 14 13.7435 1.8319 -0.0698 15 1 13.8950 0.9857 -1.2807 16 1 14.7761 2.8990 -0.0787 17 1 13.9099 0.9929 1.1442 18 6 3.5363 -0.7340 -0.0007 19 7 2.2898 -1.1321 -0.0004 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.9370 2.1279 0.0004 24 1 4.6082 2.4496 -0.0158 25 1 6.1537 0.2574 0.8690 26 1 6.1433 0.2548 -0.9109 27 1 6.9738 2.5908 -0.9200 28 1 6.9845 2.5941 0.8599 29 1 8.6088 0.7210 0.8544 30 1 8.5986 0.7171 -0.9255 31 1 9.4290 3.0532 -0.9361 32 1 9.4396 3.0577 0.8438 33 1 12.7113 4.4804 -0.0709 34 1 4.4048 -1.3760 -0.0017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385336353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:02 Heat of formation + Delta-G solvation = 40.626466 kcal Electronic energy + Delta-G solvation = -14160.284801 eV Core-core repulsion = 11707.392998 eV Total energy + Delta-G solvation = -2452.891803 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.87235 -37.65601 -35.79610 -34.21454 -33.31763 -31.01692 -29.14451 -27.06974 -25.99572 -23.53330 -22.19280 -21.42266 -21.18276 -18.44180 -18.02290 -16.59307 -16.55987 -16.34489 -16.13018 -15.57300 -15.02440 -14.57207 -14.45545 -13.74837 -13.55853 -13.51135 -13.16413 -13.03816 -12.89187 -12.38898 -12.34117 -12.15777 -11.68257 -11.41852 -11.29444 -11.04047 -10.83735 -10.52882 -10.21824 -8.18465 -7.92661 -6.29421 0.98746 1.41036 1.44129 1.51988 1.74100 2.06060 2.42338 2.81444 3.14556 3.90421 4.06050 4.16702 4.20308 4.39386 4.50536 4.52182 4.74556 4.76429 4.76837 4.88083 4.90305 4.93391 5.27365 5.29139 5.34586 5.50671 5.57229 5.81000 5.89495 6.22056 6.28041 6.55010 6.76546 6.88331 7.15546 7.39837 8.93227 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.098123 B = 0.003493 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.287140 B = 8013.582170 C = 8262.505978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.380 5.380 3 C -0.030 4.030 4 C 0.046 3.954 5 N -0.745 5.745 6 C 0.149 3.851 7 C -0.115 4.115 8 C -0.096 4.096 9 C 0.023 3.977 10 C -0.546 4.546 11 H 0.060 0.940 12 C -0.002 4.002 13 N -0.935 5.935 14 Si 0.964 3.036 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.267 1.267 18 C -0.007 4.007 19 N -0.312 5.312 20 H 0.082 0.918 21 H 0.088 0.912 22 H 0.111 0.889 23 H 0.199 0.801 24 H 0.402 0.598 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.053 0.947 31 H -0.009 1.009 32 H -0.009 1.009 33 H 0.263 0.737 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.537 -5.452 0.219 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.169 5.169 3 C -0.178 4.178 4 C -0.062 4.062 5 N -0.384 5.384 6 C 0.024 3.976 7 C -0.153 4.153 8 C -0.134 4.134 9 C -0.014 4.014 10 C -0.584 4.584 11 H 0.079 0.921 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.789 3.211 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.194 4.194 19 N -0.137 5.137 20 H 0.100 0.900 21 H 0.107 0.893 22 H 0.130 0.870 23 H 0.216 0.784 24 H 0.237 0.763 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -22.252 -6.447 0.218 23.168 hybrid contribution 1.662 1.036 -0.029 1.959 sum -20.590 -5.411 0.189 21.290 Atomic orbital electron populations 1.22086 0.71874 1.05653 1.04243 1.48484 1.07377 1.02630 1.58364 1.22164 0.89126 0.94332 1.12200 1.18015 0.87975 0.90768 1.09427 1.43802 1.00999 1.06742 1.86845 1.21039 0.81038 0.95253 1.00287 1.21615 0.93750 0.97960 1.01936 1.21361 0.93172 0.98084 1.00832 1.19022 0.93440 0.94254 0.94726 1.21746 0.92752 0.93483 1.50373 0.92130 1.25998 1.03870 0.95325 0.94800 1.70091 1.30846 1.04765 1.51817 0.85511 0.78348 0.78053 0.79216 1.19145 1.20867 1.19154 1.23758 0.95659 0.94093 1.05843 1.77103 1.01660 1.10515 1.24410 0.89973 0.89328 0.87026 0.78405 0.76283 0.93059 0.93096 0.92115 0.92104 0.92798 0.92817 0.99100 0.99091 0.92800 0.79797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 11.48 127.77 1.47 2.54 16 2 N -0.38 -7.92 4.04 -368.39 -1.49 -9.41 16 3 C -0.03 -0.61 11.57 83.46 0.97 0.36 16 4 C 0.05 1.14 6.96 37.60 0.26 1.40 16 5 N -0.75 -18.18 5.80 -339.94 -1.97 -20.15 16 6 C 0.15 3.99 5.63 86.38 0.49 4.48 16 7 C -0.11 -3.66 5.33 30.59 0.16 -3.50 16 8 C -0.10 -3.86 5.15 30.59 0.16 -3.71 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.55 -31.40 9.11 25.60 0.23 -31.17 16 11 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 12 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 13 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 14 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 C -0.01 -0.17 11.34 85.32 0.97 0.79 16 19 N -0.31 -8.37 12.57 -56.78 -0.71 -9.08 16 20 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 21 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 22 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 24 H 0.40 8.71 8.60 -92.71 -0.80 7.91 16 25 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 31 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.19 4.31 7.90 -2.91 -0.02 4.29 16 Total: -1.00 -70.24 293.73 3.72 -66.52 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.27 Total: 9.87 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 5.31 Total: -27.13 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -3.89 Total: -95.87 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.24 3.72 -66.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385336353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.151 kcal (2) G-P(sol) polarization free energy of solvation -70.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds