Wall clock time and date at job start Mon Mar 30 2020 02:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99842 * 2 1 4 4 H 1.48500 * 109.47414 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47411 * 299.99891 * 3 2 1 6 6 H 1.48498 * 109.47321 * 59.99859 * 3 2 1 7 7 C 1.37880 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99414 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47324 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47082 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47082 * 179.97438 * 12 11 10 14 14 C 1.46894 * 111.00103 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47344 * 179.97438 * 14 13 12 16 16 C 1.31004 * 119.99903 * 124.99670 * 15 14 13 17 17 C 1.50700 * 119.99903 * 179.97438 * 16 15 14 18 18 C 1.52999 * 117.49951 * 188.62081 * 17 16 15 19 19 C 1.53001 * 60.00133 * 252.51191 * 18 17 16 20 20 H 0.96991 * 120.00067 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47282 * 59.99798 * 9 7 2 22 22 H 1.09001 * 109.47265 * 300.00030 * 9 7 2 23 23 H 1.09003 * 109.46826 * 59.99684 * 10 9 7 24 24 H 1.09002 * 109.46455 * 299.99823 * 10 9 7 25 25 H 1.08998 * 109.47245 * 59.99618 * 11 10 9 26 26 H 1.09001 * 109.47204 * 299.99909 * 11 10 9 27 27 H 1.09003 * 109.46626 * 59.99939 * 12 11 10 28 28 H 1.09001 * 109.47349 * 300.00214 * 12 11 10 29 29 H 1.00898 * 110.99987 * 56.04842 * 13 12 11 30 30 H 1.08999 * 109.47576 * 59.99426 * 14 13 12 31 31 H 1.09006 * 109.47025 * 300.00216 * 14 13 12 32 32 H 1.07999 * 119.99988 * 304.99597 * 15 14 13 33 33 H 1.07995 * 120.00080 * 359.72973 * 16 15 14 34 34 H 1.09002 * 115.55035 * 334.33088 * 17 16 15 35 35 H 1.09003 * 117.49691 * 0.02562 * 18 17 16 36 36 H 1.09001 * 117.49743 * 145.01768 * 18 17 16 37 37 H 1.08997 * 117.49807 * 252.51229 * 19 18 17 38 38 H 1.08998 * 117.51752 * 107.47865 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 7 1.7403 -7.4222 0.0018 14 6 2.6647 -8.5638 0.0031 15 6 1.8767 -9.8483 0.0037 16 6 2.0893 -10.7476 -0.9250 17 6 1.3017 -12.0324 -0.9241 18 6 1.7308 -13.1248 -1.9056 19 6 0.4436 -12.3359 -2.1539 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.8714 -3.6039 0.8923 24 1 2.8727 -3.6047 -0.8878 25 1 0.8548 -5.0450 -0.8894 26 1 0.8528 -5.0447 0.8905 27 1 3.1007 -6.0922 0.8923 28 1 3.1021 -6.0922 -0.8877 29 1 1.1042 -7.4725 -0.7798 30 1 3.2921 -8.5224 0.8934 31 1 3.2934 -8.5231 -0.8865 32 1 1.1368 -10.0276 0.7697 33 1 2.8261 -10.5664 -1.6935 34 1 0.9200 -12.3491 0.0466 35 1 2.5830 -12.9143 -2.5518 36 1 1.6316 -14.1605 -1.5808 37 1 -0.5025 -12.8526 -1.9924 38 1 0.4484 -11.6060 -2.9635 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385784286.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:12 Heat of formation + Delta-G solvation = 10.231569 kcal Electronic energy + Delta-G solvation = -13971.573265 eV Core-core repulsion = 11620.903784 eV Total energy + Delta-G solvation = -2350.669481 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.10982 -36.84948 -34.59393 -32.96722 -31.58028 -28.43500 -25.73349 -23.76151 -22.68887 -21.54790 -21.35897 -20.00908 -19.71676 -16.38479 -16.15912 -15.75423 -15.05421 -14.58687 -14.32526 -14.18198 -13.87179 -12.81394 -12.58331 -12.38656 -12.06854 -11.90855 -11.64215 -11.56911 -11.28540 -11.09398 -10.98621 -10.62419 -10.53457 -10.43580 -10.39761 -9.60273 -9.25380 -9.06379 -8.93208 -8.38515 -8.30616 -5.95787 -3.97850 1.89536 3.33204 3.40399 3.44795 3.64084 4.19486 4.46484 4.51562 4.61162 4.71228 4.86663 5.02850 5.18484 5.30617 5.39513 5.42691 5.45843 5.55408 5.60483 5.66213 5.77853 5.88655 5.93437 6.18427 6.26324 6.45915 6.52466 6.57894 6.85657 6.99235 7.06923 7.25898 7.44538 7.73925 7.89759 8.05691 8.48530 9.09996 9.65892 11.15655 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.081242 B = 0.002914 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.566146 B = 9607.614838 C = 9759.612262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.689 5.689 14 C 0.086 3.914 15 C -0.140 4.140 16 C -0.134 4.134 17 C -0.125 4.125 18 C -0.178 4.178 19 C -0.173 4.173 20 H 0.259 0.741 21 H 0.014 0.986 22 H 0.016 0.984 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.341 0.659 30 H 0.079 0.921 31 H 0.030 0.970 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.494 -23.165 -2.571 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.070 4.070 13 N -0.319 5.319 14 C -0.043 4.043 15 C -0.158 4.158 16 C -0.153 4.153 17 C -0.143 4.143 18 C -0.215 4.215 19 C -0.210 4.210 20 H 0.069 0.931 21 H 0.033 0.967 22 H 0.034 0.966 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.158 0.842 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.275 -23.043 -1.882 23.350 hybrid contribution 0.743 0.977 -0.917 1.532 sum 4.018 -22.066 -2.799 22.603 Atomic orbital electron populations 1.69980 1.06041 1.26396 1.51164 1.25046 0.94857 0.99258 0.95473 0.86550 0.80104 0.83880 0.77544 1.19782 1.21053 1.21027 1.21331 0.93053 0.91212 1.50121 0.92721 1.19102 0.94049 0.91362 0.97177 1.21591 0.99081 0.93956 1.00073 1.21640 0.97884 0.93818 1.02026 1.22097 0.96264 0.88502 1.00136 1.60485 1.19864 1.01470 1.50131 1.21002 0.93885 0.88699 1.00712 1.22793 0.99547 0.94542 0.98931 1.22219 0.99628 0.94266 0.99166 1.21210 1.02625 0.95119 0.95307 1.22970 0.98842 0.96625 1.03101 1.22960 0.95080 1.03314 0.99639 0.93112 0.96723 0.96582 0.93421 0.93700 0.92750 0.91609 0.91227 0.95586 0.84165 0.90248 0.95165 0.86675 0.87473 0.87425 0.88728 0.88720 0.88594 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.12 -2.03 5.47 -26.73 -0.15 -2.18 16 12 C 0.06 0.86 5.68 -3.83 -0.02 0.84 16 13 N -0.69 -9.01 6.49 -115.06 -0.75 -9.76 16 14 C 0.09 0.95 6.12 -4.98 -0.03 0.91 16 15 C -0.14 -1.39 9.41 -36.03 -0.34 -1.73 16 16 C -0.13 -1.21 9.27 -36.03 -0.33 -1.55 16 17 C -0.12 -1.01 5.99 -91.77 -0.55 -1.56 16 18 C -0.18 -1.24 10.23 -26.73 -0.27 -1.51 16 19 C -0.17 -1.28 10.23 -26.73 -0.27 -1.55 16 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 21 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.34 4.26 8.72 -39.29 -0.34 3.92 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.32 7.79 -51.93 -0.40 -0.08 16 32 H 0.12 1.16 8.05 -52.49 -0.42 0.74 16 33 H 0.11 0.93 7.84 -52.49 -0.41 0.52 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -30.40 320.19 -9.90 -40.30 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.04 Total: -1.31 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -2.66 Total: -24.28 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.01 Total: -36.57 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.40 -9.90 -40.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385784286.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.536 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds