Wall clock time and date at job start Mon Mar 30 2020 02:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99842 * 2 1 4 4 H 1.48500 * 109.47414 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47411 * 299.99891 * 3 2 1 6 6 H 1.48498 * 109.47321 * 59.99859 * 3 2 1 7 7 C 1.37880 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99414 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47324 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47082 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47082 * 179.97438 * 12 11 10 14 14 C 1.46894 * 111.00103 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47344 * 179.97438 * 14 13 12 16 16 C 1.31004 * 119.99903 * 124.99670 * 15 14 13 17 17 C 1.50700 * 119.99903 * 179.97438 * 16 15 14 18 18 C 1.52999 * 117.49951 * 188.62081 * 17 16 15 19 19 C 1.53001 * 60.00133 * 252.51191 * 18 17 16 20 20 H 0.96991 * 120.00067 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47282 * 59.99798 * 9 7 2 22 22 H 1.09001 * 109.47265 * 300.00030 * 9 7 2 23 23 H 1.09003 * 109.46826 * 59.99684 * 10 9 7 24 24 H 1.09002 * 109.46455 * 299.99823 * 10 9 7 25 25 H 1.08998 * 109.47245 * 59.99618 * 11 10 9 26 26 H 1.09001 * 109.47204 * 299.99909 * 11 10 9 27 27 H 1.09003 * 109.46626 * 59.99939 * 12 11 10 28 28 H 1.09001 * 109.47349 * 300.00214 * 12 11 10 29 29 H 1.00898 * 110.99987 * 56.04842 * 13 12 11 30 30 H 1.08999 * 109.47576 * 59.99426 * 14 13 12 31 31 H 1.09006 * 109.47025 * 300.00216 * 14 13 12 32 32 H 1.07999 * 119.99988 * 304.99597 * 15 14 13 33 33 H 1.07995 * 120.00080 * 359.72973 * 16 15 14 34 34 H 1.09002 * 115.55035 * 334.33088 * 17 16 15 35 35 H 1.09003 * 117.49691 * 0.02562 * 18 17 16 36 36 H 1.09001 * 117.49743 * 145.01768 * 18 17 16 37 37 H 1.08997 * 117.49807 * 252.51229 * 19 18 17 38 38 H 1.08998 * 117.51752 * 107.47865 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 7 1.7403 -7.4222 0.0018 14 6 2.6647 -8.5638 0.0031 15 6 1.8767 -9.8483 0.0037 16 6 2.0893 -10.7476 -0.9250 17 6 1.3017 -12.0324 -0.9241 18 6 1.7308 -13.1248 -1.9056 19 6 0.4436 -12.3359 -2.1539 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.8714 -3.6039 0.8923 24 1 2.8727 -3.6047 -0.8878 25 1 0.8548 -5.0450 -0.8894 26 1 0.8528 -5.0447 0.8905 27 1 3.1007 -6.0922 0.8923 28 1 3.1021 -6.0922 -0.8877 29 1 1.1042 -7.4725 -0.7798 30 1 3.2921 -8.5224 0.8934 31 1 3.2934 -8.5231 -0.8865 32 1 1.1368 -10.0276 0.7697 33 1 2.8261 -10.5664 -1.6935 34 1 0.9200 -12.3491 0.0466 35 1 2.5830 -12.9143 -2.5518 36 1 1.6316 -14.1605 -1.5808 37 1 -0.5025 -12.8526 -1.9924 38 1 0.4484 -11.6060 -2.9635 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385784286.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:12 Heat of formation + Delta-G solvation = -6.742869 kcal Electronic energy + Delta-G solvation = -13972.309332 eV Core-core repulsion = 11620.903784 eV Total energy + Delta-G solvation = -2351.405548 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.80590 -37.91193 -36.17110 -34.57593 -33.04163 -30.05501 -27.13145 -25.28819 -23.22996 -22.88501 -22.33943 -21.63081 -20.49374 -18.44355 -17.25295 -16.62683 -16.47101 -16.11290 -15.54921 -15.25123 -14.86018 -14.39896 -14.01063 -13.74336 -13.31071 -13.11811 -12.95568 -12.81801 -12.43948 -12.34211 -12.16896 -12.13006 -12.04090 -11.80097 -11.38013 -11.31427 -11.21897 -10.96910 -10.56179 -9.74419 -9.40422 -8.20167 -6.31679 1.16275 1.39514 1.40129 1.53676 2.40844 3.03538 3.12470 3.30326 3.72860 4.02968 4.05678 4.11811 4.16902 4.23492 4.33852 4.46408 4.55272 4.63417 4.74819 4.78477 4.79732 4.84903 4.93309 5.03222 5.23609 5.25097 5.25614 5.27766 5.35447 5.55093 5.71365 5.77782 5.79989 5.86974 6.08573 6.25670 6.44886 6.86203 7.37655 8.92037 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.081242 B = 0.002914 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.566146 B = 9607.614838 C = 9759.612262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.070 3.930 13 N -0.696 5.696 14 C 0.089 3.911 15 C -0.152 4.152 16 C -0.123 4.123 17 C -0.141 4.141 18 C -0.171 4.171 19 C -0.175 4.175 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.011 1.011 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.344 0.656 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 -23.842 -2.950 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.016 4.016 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.059 4.059 13 N -0.327 5.327 14 C -0.039 4.039 15 C -0.171 4.171 16 C -0.142 4.142 17 C -0.159 4.159 18 C -0.208 4.208 19 C -0.212 4.212 20 H 0.072 0.928 21 H 0.008 0.992 22 H 0.007 0.993 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.162 0.838 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.574 -23.741 -2.261 24.283 hybrid contribution 0.297 1.131 -0.818 1.427 sum 4.871 -22.611 -3.079 23.334 Atomic orbital electron populations 1.70114 1.07869 1.27725 1.51844 1.26049 0.95830 1.03563 0.94770 0.85359 0.79045 0.78566 0.77828 1.18521 1.20272 1.20315 1.21774 0.93582 0.92500 1.50296 0.92157 1.19037 0.94544 0.93347 0.94628 1.21400 0.97977 0.93612 1.00509 1.21469 0.98068 0.93388 1.01485 1.21874 0.95311 0.88057 1.00661 1.60436 1.20360 1.01433 1.50504 1.21000 0.93675 0.88233 1.01023 1.22666 1.00196 0.94533 0.99688 1.22354 0.99086 0.94300 0.98466 1.21276 1.03420 0.95274 0.95890 1.23062 0.98631 0.96895 1.02199 1.23027 0.95770 1.03435 0.98951 0.92764 0.99197 0.99267 0.93006 0.93065 0.92869 0.92649 0.90942 0.94811 0.83839 0.90215 0.94500 0.87055 0.86992 0.87204 0.88362 0.87526 0.87718 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.34 13.29 21.45 0.28 -58.06 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -4.08 5.15 30.60 0.16 -3.92 16 11 C -0.11 -3.70 5.47 30.59 0.17 -3.53 16 12 C 0.07 1.95 5.68 86.30 0.49 2.44 16 13 N -0.70 -17.39 6.49 -517.94 -3.36 -20.75 16 14 C 0.09 1.84 6.12 85.56 0.52 2.36 16 15 C -0.15 -2.87 9.41 25.64 0.24 -2.63 16 16 C -0.12 -2.06 9.27 25.64 0.24 -1.82 16 17 C -0.14 -2.07 5.99 -11.54 -0.07 -2.14 16 18 C -0.17 -2.05 10.23 30.59 0.31 -1.73 16 19 C -0.17 -2.31 10.23 30.60 0.31 -2.00 16 20 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 21 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 22 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 23 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.34 8.22 8.72 -89.70 -0.78 7.44 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 0.72 7.79 -2.38 -0.02 0.70 16 32 H 0.11 2.17 8.05 -2.91 -0.02 2.15 16 33 H 0.11 1.75 7.84 -2.91 -0.02 1.73 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -64.59 320.19 2.38 -62.21 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.21 Total: 12.60 kcal Atomic # 6 Polarization: -46.32 SS G_CDS: 3.22 Total: -43.10 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -3.08 Total: -78.81 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.59 2.38 -62.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385784286.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.464 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds