Wall clock time and date at job start Mon Mar 30 2020 02:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99544 * 2 1 4 4 H 1.48504 * 109.47267 * 269.99574 * 3 2 1 5 5 H 1.48492 * 109.47495 * 29.99992 * 3 2 1 6 6 H 1.48500 * 109.46885 * 149.99760 * 3 2 1 7 7 C 1.37877 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99461 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46738 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46792 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.46949 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00326 * 179.97438 * 12 11 10 14 14 H 1.09000 * 115.57554 * 9.24291 * 13 12 11 15 15 C 1.53085 * 117.51086 * 223.48780 * 13 12 11 16 16 C 1.52556 * 59.89114 * 252.54167 * 15 13 12 17 17 C 1.53870 * 120.82541 * 249.79389 * 16 15 13 18 18 C 1.54996 * 104.06248 * 192.35603 * 17 16 15 19 19 C 1.54916 * 102.81689 * 37.56804 * 18 17 16 20 20 C 1.53472 * 121.09006 * 110.42085 * 16 15 13 21 21 H 0.96998 * 120.00104 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.46848 * 60.00364 * 9 7 2 23 23 H 1.08993 * 109.47110 * 300.00118 * 9 7 2 24 24 H 1.09000 * 109.47119 * 60.00117 * 10 9 7 25 25 H 1.09005 * 109.46850 * 300.00257 * 10 9 7 26 26 H 1.09000 * 109.47507 * 59.99970 * 11 10 9 27 27 H 1.09000 * 109.46919 * 299.99321 * 11 10 9 28 28 H 1.00908 * 111.00109 * 303.95128 * 12 11 10 29 29 H 1.09005 * 117.50889 * 145.08619 * 15 13 12 30 30 H 1.09000 * 117.54191 * 359.97438 * 15 13 12 31 31 H 1.09002 * 110.51506 * 311.00653 * 17 16 15 32 32 H 1.09009 * 110.50901 * 73.71298 * 17 16 15 33 33 H 1.09004 * 110.73708 * 279.23330 * 18 17 16 34 34 H 1.08996 * 110.89432 * 155.97919 * 18 17 16 35 35 H 1.09002 * 110.47995 * 203.59267 * 19 18 17 36 36 H 1.09004 * 110.59570 * 81.02107 * 19 18 17 37 37 H 1.08998 * 110.07207 * 263.31242 * 20 16 15 38 38 H 1.08999 * 110.07549 * 24.79108 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4350 -6.1035 0.0005 13 6 1.7348 -7.3949 0.0005 14 1 0.6575 -7.3461 -0.1578 15 6 2.2634 -8.4859 0.9354 16 6 2.4772 -8.5992 -0.5709 17 6 1.7334 -9.6647 -1.3949 18 6 2.4559 -9.6525 -2.7661 19 6 3.9382 -9.4358 -2.3715 20 6 3.8749 -8.4483 -1.1865 21 1 -0.4850 0.8400 -0.0004 22 1 0.6249 -2.5570 -0.8897 23 1 0.6241 -2.5567 0.8902 24 1 2.8720 -3.6043 0.8905 25 1 2.8721 -3.6042 -0.8895 26 1 0.8540 -5.0446 -0.8903 27 1 0.8536 -5.0450 0.8897 28 1 3.0705 -6.0364 -0.7805 29 1 1.5337 -9.1546 1.3920 30 1 3.1309 -8.2460 1.5502 31 1 1.8238 -10.6436 -0.9241 32 1 0.6845 -9.3923 -1.5134 33 1 2.0966 -8.8298 -3.3844 34 1 2.3285 -10.6047 -3.2810 35 1 4.4941 -9.0002 -3.2018 36 1 4.3936 -10.3761 -2.0605 37 1 4.0190 -7.4280 -1.5418 38 1 4.6376 -8.6984 -0.4490 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387081248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:46 Heat of formation + Delta-G solvation = -7.620012 kcal Electronic energy + Delta-G solvation = -14891.315196 eV Core-core repulsion = 12539.871612 eV Total energy + Delta-G solvation = -2351.443584 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.42663 -35.91429 -34.07166 -32.58518 -30.27358 -28.85092 -26.06913 -25.32321 -22.62079 -21.25650 -20.74239 -20.09725 -18.58082 -16.31963 -16.10146 -15.53232 -14.88788 -14.70288 -14.36313 -13.68214 -13.39364 -13.03083 -12.64496 -12.21636 -12.08668 -11.71844 -11.40195 -11.21716 -11.17168 -10.94649 -10.88140 -10.73476 -10.58371 -10.51940 -10.31313 -9.70024 -9.63032 -9.27142 -9.01457 -8.31925 -8.00988 -5.97063 -3.99109 3.34091 3.40089 3.44097 3.78169 4.13779 4.47486 4.52135 4.53789 4.81763 4.93221 5.15884 5.28821 5.35635 5.38769 5.51071 5.62824 5.66206 5.76510 5.79030 5.83361 5.86197 5.92918 5.98452 6.03117 6.08865 6.17184 6.27667 6.34366 6.74612 6.82066 7.15947 7.40486 7.64317 7.71447 7.86529 8.03453 8.46734 9.08085 9.64770 11.14441 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051827 B = 0.004150 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.130480 B = 6745.838287 C = 6884.625233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.061 3.939 12 N -0.660 5.660 13 C 0.035 3.965 14 H 0.096 0.904 15 C -0.160 4.160 16 C -0.144 4.144 17 C -0.088 4.088 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.086 4.086 21 H 0.260 0.740 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.338 0.662 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.675 -19.571 -3.267 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.068 4.068 12 N -0.291 5.291 13 C -0.076 4.076 14 H 0.114 0.886 15 C -0.198 4.198 16 C -0.145 4.145 17 C -0.126 4.126 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.124 4.124 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.035 0.965 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.159 0.841 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.616 -19.409 -2.589 20.117 hybrid contribution 0.035 0.955 -0.839 1.272 sum 4.651 -18.453 -3.427 19.337 Atomic orbital electron populations 1.69967 1.06068 1.26541 1.51067 1.25030 0.94845 0.99256 0.95389 0.86593 0.79882 0.83471 0.78057 1.20710 1.21237 1.19845 1.21263 0.93062 0.91063 1.50307 0.92670 1.19066 0.94014 0.91349 0.97143 1.21632 0.99222 0.92988 1.00700 1.22179 0.94095 0.90503 0.99979 1.60349 1.19736 1.00125 1.48890 1.22505 0.95956 0.85975 1.03158 0.88603 1.23175 1.03504 1.01514 0.91587 1.22125 0.97116 0.99537 0.95715 1.21881 0.98483 0.97527 0.94686 1.22470 0.95430 1.01391 0.96805 1.22344 0.96645 0.99238 0.97792 1.21516 0.94507 0.99484 0.96858 0.93049 0.96806 0.96521 0.92528 0.93705 0.95634 0.91341 0.84110 0.89149 0.88400 0.91369 0.91834 0.91488 0.91748 0.91728 0.91760 0.91515 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.29 5.41 -26.73 -0.14 -2.44 16 11 C 0.06 1.10 5.54 -3.83 -0.02 1.08 16 12 N -0.66 -10.21 6.64 -106.92 -0.71 -10.92 16 13 C 0.04 0.47 6.09 -67.89 -0.41 0.05 16 14 H 0.10 1.29 7.90 -51.93 -0.41 0.88 16 15 C -0.16 -1.88 10.19 -26.91 -0.27 -2.15 16 16 C -0.14 -1.60 2.46 -154.26 -0.38 -1.98 16 17 C -0.09 -0.85 6.58 -25.22 -0.17 -1.01 16 18 C -0.12 -1.10 6.91 -24.67 -0.17 -1.27 16 19 C -0.12 -1.09 6.84 -24.99 -0.17 -1.26 16 20 C -0.09 -0.90 6.31 -25.76 -0.16 -1.07 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.34 4.97 6.77 -39.29 -0.27 4.71 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.61 8.11 -51.92 -0.42 0.19 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.75 6.37 -51.93 -0.33 0.42 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -29.99 305.84 -9.73 -39.72 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.89 Total: -0.28 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -2.45 Total: -23.43 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.03 Total: -37.59 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.99 -9.73 -39.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387081248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.097 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds