Wall clock time and date at job start Mon Mar 30 2020 02:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99544 * 2 1 4 4 H 1.48504 * 109.47267 * 269.99574 * 3 2 1 5 5 H 1.48492 * 109.47495 * 29.99992 * 3 2 1 6 6 H 1.48500 * 109.46885 * 149.99760 * 3 2 1 7 7 C 1.37877 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99461 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46738 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46792 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.46949 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00326 * 179.97438 * 12 11 10 14 14 H 1.09000 * 115.57554 * 9.24291 * 13 12 11 15 15 C 1.53085 * 117.51086 * 223.48780 * 13 12 11 16 16 C 1.52556 * 59.89114 * 252.54167 * 15 13 12 17 17 C 1.53870 * 120.82541 * 249.79389 * 16 15 13 18 18 C 1.54996 * 104.06248 * 192.35603 * 17 16 15 19 19 C 1.54916 * 102.81689 * 37.56804 * 18 17 16 20 20 C 1.53472 * 121.09006 * 110.42085 * 16 15 13 21 21 H 0.96998 * 120.00104 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.46848 * 60.00364 * 9 7 2 23 23 H 1.08993 * 109.47110 * 300.00118 * 9 7 2 24 24 H 1.09000 * 109.47119 * 60.00117 * 10 9 7 25 25 H 1.09005 * 109.46850 * 300.00257 * 10 9 7 26 26 H 1.09000 * 109.47507 * 59.99970 * 11 10 9 27 27 H 1.09000 * 109.46919 * 299.99321 * 11 10 9 28 28 H 1.00908 * 111.00109 * 303.95128 * 12 11 10 29 29 H 1.09005 * 117.50889 * 145.08619 * 15 13 12 30 30 H 1.09000 * 117.54191 * 359.97438 * 15 13 12 31 31 H 1.09002 * 110.51506 * 311.00653 * 17 16 15 32 32 H 1.09009 * 110.50901 * 73.71298 * 17 16 15 33 33 H 1.09004 * 110.73708 * 279.23330 * 18 17 16 34 34 H 1.08996 * 110.89432 * 155.97919 * 18 17 16 35 35 H 1.09002 * 110.47995 * 203.59267 * 19 18 17 36 36 H 1.09004 * 110.59570 * 81.02107 * 19 18 17 37 37 H 1.08998 * 110.07207 * 263.31242 * 20 16 15 38 38 H 1.08999 * 110.07549 * 24.79108 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4350 -6.1035 0.0005 13 6 1.7348 -7.3949 0.0005 14 1 0.6575 -7.3461 -0.1578 15 6 2.2634 -8.4859 0.9354 16 6 2.4772 -8.5992 -0.5709 17 6 1.7334 -9.6647 -1.3949 18 6 2.4559 -9.6525 -2.7661 19 6 3.9382 -9.4358 -2.3715 20 6 3.8749 -8.4483 -1.1865 21 1 -0.4850 0.8400 -0.0004 22 1 0.6249 -2.5570 -0.8897 23 1 0.6241 -2.5567 0.8902 24 1 2.8720 -3.6043 0.8905 25 1 2.8721 -3.6042 -0.8895 26 1 0.8540 -5.0446 -0.8903 27 1 0.8536 -5.0450 0.8897 28 1 3.0705 -6.0364 -0.7805 29 1 1.5337 -9.1546 1.3920 30 1 3.1309 -8.2460 1.5502 31 1 1.8238 -10.6436 -0.9241 32 1 0.6845 -9.3923 -1.5134 33 1 2.0966 -8.8298 -3.3844 34 1 2.3285 -10.6047 -3.2810 35 1 4.4941 -9.0002 -3.2018 36 1 4.3936 -10.3761 -2.0605 37 1 4.0190 -7.4280 -1.5418 38 1 4.6376 -8.6984 -0.4490 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387081248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:46 Heat of formation + Delta-G solvation = -24.559249 kcal Electronic energy + Delta-G solvation = -14892.049737 eV Core-core repulsion = 12539.871612 eV Total energy + Delta-G solvation = -2352.178124 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.34735 -37.25972 -35.61015 -34.28311 -31.98745 -29.64120 -27.91049 -26.21211 -24.45515 -22.36530 -21.89280 -21.45004 -19.52294 -18.49283 -17.16748 -16.60870 -16.41260 -16.10874 -15.79328 -14.98650 -14.38925 -14.25920 -14.14054 -13.66020 -13.44659 -13.28911 -12.84685 -12.71905 -12.48507 -12.28211 -11.94546 -11.93887 -11.75487 -11.68083 -11.46854 -11.39891 -11.31372 -11.16316 -10.56262 -10.47818 -9.22272 -8.20867 -6.32262 1.39820 1.41556 1.52963 2.40682 2.83616 3.01781 3.12204 3.62992 3.73535 3.97602 4.08118 4.18126 4.32623 4.34322 4.44183 4.56852 4.64256 4.70190 4.80487 4.88612 4.93075 4.97964 5.03421 5.07954 5.09810 5.18023 5.21182 5.22304 5.28243 5.42114 5.49123 5.50688 5.72581 5.84088 6.08967 6.26108 6.41944 6.84370 7.37108 8.91212 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051827 B = 0.004150 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.130480 B = 6745.838287 C = 6884.625233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.075 3.925 12 N -0.660 5.660 13 C 0.010 3.990 14 H 0.093 0.907 15 C -0.154 4.154 16 C -0.131 4.131 17 C -0.088 4.088 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.091 4.091 21 H 0.264 0.736 22 H -0.009 1.009 23 H -0.008 1.008 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.061 0.939 28 H 0.342 0.658 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -20.452 -3.648 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.054 4.054 12 N -0.292 5.292 13 C -0.101 4.101 14 H 0.111 0.889 15 C -0.192 4.192 16 C -0.132 4.132 17 C -0.126 4.126 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.128 4.128 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.010 0.990 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.163 0.837 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.841 -20.314 -2.972 21.345 hybrid contribution -0.367 1.187 -0.713 1.432 sum 5.474 -19.127 -3.685 20.233 Atomic orbital electron populations 1.70098 1.07843 1.27824 1.51681 1.26005 0.95796 1.03447 0.94633 0.85418 0.78640 0.78255 0.78561 1.19636 1.20629 1.18764 1.21696 0.93552 0.92386 1.50612 0.92230 1.18969 0.94404 0.93087 0.94791 1.21378 0.98066 0.92872 1.00712 1.21858 0.93926 0.90003 0.99582 1.60271 1.19278 1.00344 1.49270 1.22556 0.95957 0.85587 1.05969 0.88950 1.23215 1.03403 1.00558 0.92055 1.22221 0.97319 0.98143 0.95506 1.21933 0.98271 0.97491 0.94881 1.22483 0.95181 1.01993 0.96373 1.22345 0.96850 0.99284 0.97180 1.21580 0.94101 0.99528 0.97634 0.92725 0.99041 0.98999 0.92892 0.93108 0.95826 0.92045 0.83710 0.87640 0.88988 0.89993 0.91965 0.92355 0.90063 0.91216 0.90569 0.92481 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.93 13.29 21.45 0.28 -57.64 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.99 5.41 30.59 0.17 -3.82 16 11 C 0.08 2.75 5.54 86.30 0.48 3.23 16 12 N -0.66 -20.19 6.64 -492.17 -3.27 -23.46 16 13 C 0.01 0.25 6.09 44.80 0.27 0.53 16 14 H 0.09 2.46 7.90 -2.39 -0.02 2.44 16 15 C -0.15 -3.40 10.19 30.48 0.31 -3.09 16 16 C -0.13 -2.71 2.46 -52.02 -0.13 -2.84 16 17 C -0.09 -1.50 6.58 31.57 0.21 -1.29 16 18 C -0.12 -1.91 6.91 31.93 0.22 -1.68 16 19 C -0.12 -1.85 6.84 31.72 0.22 -1.63 16 20 C -0.09 -1.76 6.31 31.22 0.20 -1.57 16 21 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 22 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 23 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 24 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.34 9.88 6.77 -89.69 -0.61 9.28 16 29 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.08 8.11 -2.38 -0.02 1.07 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.22 6.37 -2.39 -0.02 1.20 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -63.85 305.84 2.22 -61.63 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.40 Total: 14.41 kcal Atomic # 6 Polarization: -44.74 SS G_CDS: 2.79 Total: -41.95 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -2.98 Total: -81.10 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -63.85 2.22 -61.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387081248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.069 kcal (2) G-P(sol) polarization free energy of solvation -63.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds