Wall clock time and date at job start Mon Mar 30 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47348 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47135 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99935 * 180.02562 * 12 11 10 14 14 H 1.09000 * 115.55472 * 350.71944 * 13 12 11 15 15 C 1.53086 * 117.50858 * 136.50213 * 13 12 11 16 16 C 1.52553 * 117.51004 * 205.00194 * 13 12 11 17 17 C 1.53872 * 120.82436 * 142.33484 * 16 13 12 18 18 C 1.54993 * 104.06536 * 192.35938 * 17 16 13 19 19 C 1.54924 * 102.81886 * 37.56712 * 18 17 16 20 20 C 1.53482 * 121.08843 * 2.96461 * 16 13 12 21 21 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 23 23 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 24 24 H 1.09004 * 109.46930 * 299.99899 * 10 9 7 25 25 H 1.09000 * 109.47312 * 59.99955 * 10 9 7 26 26 H 1.09001 * 109.46611 * 299.99902 * 11 10 9 27 27 H 1.09000 * 109.46866 * 59.99785 * 11 10 9 28 28 H 1.00896 * 111.00516 * 303.95575 * 12 11 10 29 29 H 1.09006 * 117.50855 * 214.91381 * 15 13 12 30 30 H 1.08998 * 117.51098 * 0.02562 * 15 13 12 31 31 H 1.08996 * 110.51018 * 311.00320 * 17 16 13 32 32 H 1.09000 * 110.51170 * 73.71619 * 17 16 13 33 33 H 1.09005 * 110.74032 * 279.24242 * 18 17 16 34 34 H 1.08994 * 110.90270 * 155.97094 * 18 17 16 35 35 H 1.08999 * 110.48316 * 203.59891 * 19 18 17 36 36 H 1.08996 * 110.59697 * 81.01886 * 19 18 17 37 37 H 1.09001 * 110.07142 * 263.30759 * 20 16 13 38 38 H 1.08996 * 110.07475 * 24.79081 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 6 1.4799 -4.9872 0.0141 12 7 2.4344 -6.1037 0.0207 13 6 1.7340 -7.3950 0.0209 14 1 0.6561 -7.3453 0.1749 15 6 2.2666 -8.4884 -0.9088 16 6 2.4736 -8.5977 0.5988 17 6 1.7265 -9.6620 1.4214 18 6 2.8579 -10.4986 2.0712 19 6 3.9258 -9.4284 2.4095 20 6 3.8693 -8.4466 1.2192 21 1 -0.4851 -0.8400 -0.0004 22 1 0.6205 -2.5547 0.8933 23 1 0.6280 -2.5591 -0.8867 24 1 2.8757 -3.6068 -0.8739 25 1 2.8676 -3.6021 0.9061 26 1 0.8495 -5.0422 0.9016 27 1 0.8570 -5.0475 -0.8784 28 1 3.0723 -6.0389 -0.7583 29 1 1.5389 -9.1583 -1.3669 30 1 3.1368 -8.2496 -1.5202 31 1 1.1119 -9.1902 2.1880 32 1 1.1146 -10.2872 0.7711 33 1 3.2531 -11.2283 1.3644 34 1 2.5055 -10.9921 2.9769 35 1 4.9133 -9.8843 2.4812 36 1 3.6747 -8.9164 3.3384 37 1 4.6342 -8.7030 0.4863 38 1 4.0145 -7.4246 1.5692 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387081249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:48 Heat of formation + Delta-G solvation = -12.199480 kcal Electronic energy + Delta-G solvation = -14875.661579 eV Core-core repulsion = 12524.019415 eV Total energy + Delta-G solvation = -2351.642164 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.37524 -36.09249 -34.27545 -32.70841 -30.10719 -28.74728 -25.79893 -25.10117 -22.54943 -21.73936 -20.59996 -20.38494 -18.52725 -16.71790 -15.79947 -15.58083 -15.03162 -14.82714 -13.78820 -13.69578 -13.45284 -12.92039 -12.90973 -12.43027 -12.27957 -11.74373 -11.42118 -11.20247 -11.10449 -10.95504 -10.84125 -10.67647 -10.63621 -10.45700 -10.10477 -9.84023 -9.76649 -9.52386 -8.50090 -8.29241 -8.01947 -6.32869 -4.01348 3.46128 3.48484 3.67077 3.72066 4.12921 4.53257 4.58260 4.64275 4.78575 4.97378 5.10047 5.18634 5.41752 5.44441 5.55006 5.62066 5.64817 5.72574 5.73879 5.76876 5.84643 5.90674 5.95051 6.06583 6.12997 6.21260 6.26656 6.39621 6.60239 6.66543 6.98992 7.28954 7.45663 7.53026 7.60935 8.26633 8.50407 8.92428 9.70920 11.07862 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056822 B = 0.004066 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.645664 B = 6883.984182 C = 7054.607803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.601 4.601 8 H 0.048 0.952 9 C 0.009 3.991 10 C -0.100 4.100 11 C 0.060 3.940 12 N -0.656 5.656 13 C 0.039 3.961 14 H 0.105 0.895 15 C -0.197 4.197 16 C -0.119 4.119 17 C -0.089 4.089 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.085 4.085 21 H 0.268 0.732 22 H 0.007 0.993 23 H 0.005 0.995 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.025 0.975 28 H 0.339 0.661 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -19.889 1.342 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.639 4.639 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.139 4.139 11 C -0.068 4.068 12 N -0.285 5.285 13 C -0.072 4.072 14 H 0.123 0.877 15 C -0.236 4.236 16 C -0.120 4.120 17 C -0.126 4.126 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.122 4.122 21 H 0.078 0.922 22 H 0.025 0.975 23 H 0.023 0.977 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.159 0.841 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.066 -18.188 2.027 18.989 hybrid contribution -0.132 -1.785 -1.006 2.053 sum 4.934 -19.973 1.021 20.599 Atomic orbital electron populations 1.70780 1.06891 1.30543 1.46902 1.25873 0.96572 1.02768 0.93838 0.83542 0.74873 0.75317 0.76511 1.21481 1.20790 1.21419 1.22066 0.94309 0.92054 1.55461 0.93328 1.19192 0.94658 0.93180 0.95833 1.21497 0.98928 0.92460 1.00966 1.22179 0.94149 0.90574 0.99890 1.60197 1.19256 1.00091 1.48986 1.22474 0.96396 0.85911 1.02456 0.87703 1.23566 1.03451 1.03835 0.92703 1.21996 0.97573 0.98558 0.93907 1.21878 0.96968 0.95503 0.98271 1.22457 0.96111 0.97394 0.99946 1.22357 0.98569 0.96586 0.98601 1.21519 0.93800 1.00521 0.96365 0.92168 0.97466 0.97709 0.93474 0.92367 0.91433 0.95633 0.84149 0.89066 0.88855 0.91234 0.92006 0.91749 0.91839 0.92022 0.91643 0.92404 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.67 13.65 55.43 0.76 -27.91 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.60 -17.64 9.11 -34.44 -0.31 -17.95 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.01 0.23 4.28 -27.88 -0.12 0.12 16 10 C -0.10 -2.14 5.41 -26.73 -0.14 -2.29 16 11 C 0.06 1.07 5.54 -3.82 -0.02 1.05 16 12 N -0.66 -9.87 6.04 -106.92 -0.65 -10.52 16 13 C 0.04 0.51 6.17 -67.89 -0.42 0.09 16 14 H 0.11 1.38 7.90 -51.93 -0.41 0.97 16 15 C -0.20 -2.17 9.93 -26.91 -0.27 -2.44 16 16 C -0.12 -1.37 2.46 -154.26 -0.38 -1.74 16 17 C -0.09 -0.89 6.58 -25.22 -0.17 -1.06 16 18 C -0.12 -1.09 6.91 -24.66 -0.17 -1.26 16 19 C -0.12 -1.21 6.84 -24.98 -0.17 -1.38 16 20 C -0.08 -0.96 6.35 -25.75 -0.16 -1.13 16 21 H 0.27 8.36 7.22 -40.82 -0.29 8.06 16 22 H 0.01 0.19 8.00 -51.93 -0.42 -0.22 16 23 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.34 4.84 8.52 -39.29 -0.33 4.51 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.57 8.11 -51.93 -0.42 0.14 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.08 7.65 -51.93 -0.40 0.68 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -30.67 306.76 -9.74 -40.41 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.96 Total: 0.39 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: -2.43 Total: -27.71 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.11 Total: -38.43 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.67 -9.74 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387081249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.212 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds