Wall clock time and date at job start Mon Mar 30 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47348 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47135 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99935 * 180.02562 * 12 11 10 14 14 H 1.09000 * 115.55472 * 350.71944 * 13 12 11 15 15 C 1.53086 * 117.50858 * 136.50213 * 13 12 11 16 16 C 1.52553 * 117.51004 * 205.00194 * 13 12 11 17 17 C 1.53872 * 120.82436 * 142.33484 * 16 13 12 18 18 C 1.54993 * 104.06536 * 192.35938 * 17 16 13 19 19 C 1.54924 * 102.81886 * 37.56712 * 18 17 16 20 20 C 1.53482 * 121.08843 * 2.96461 * 16 13 12 21 21 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 23 23 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 24 24 H 1.09004 * 109.46930 * 299.99899 * 10 9 7 25 25 H 1.09000 * 109.47312 * 59.99955 * 10 9 7 26 26 H 1.09001 * 109.46611 * 299.99902 * 11 10 9 27 27 H 1.09000 * 109.46866 * 59.99785 * 11 10 9 28 28 H 1.00896 * 111.00516 * 303.95575 * 12 11 10 29 29 H 1.09006 * 117.50855 * 214.91381 * 15 13 12 30 30 H 1.08998 * 117.51098 * 0.02562 * 15 13 12 31 31 H 1.08996 * 110.51018 * 311.00320 * 17 16 13 32 32 H 1.09000 * 110.51170 * 73.71619 * 17 16 13 33 33 H 1.09005 * 110.74032 * 279.24242 * 18 17 16 34 34 H 1.08994 * 110.90270 * 155.97094 * 18 17 16 35 35 H 1.08999 * 110.48316 * 203.59891 * 19 18 17 36 36 H 1.08996 * 110.59697 * 81.01886 * 19 18 17 37 37 H 1.09001 * 110.07142 * 263.30759 * 20 16 13 38 38 H 1.08996 * 110.07475 * 24.79081 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 6 1.4799 -4.9872 0.0141 12 7 2.4344 -6.1037 0.0207 13 6 1.7340 -7.3950 0.0209 14 1 0.6561 -7.3453 0.1749 15 6 2.2666 -8.4884 -0.9088 16 6 2.4736 -8.5977 0.5988 17 6 1.7265 -9.6620 1.4214 18 6 2.8579 -10.4986 2.0712 19 6 3.9258 -9.4284 2.4095 20 6 3.8693 -8.4466 1.2192 21 1 -0.4851 -0.8400 -0.0004 22 1 0.6205 -2.5547 0.8933 23 1 0.6280 -2.5591 -0.8867 24 1 2.8757 -3.6068 -0.8739 25 1 2.8676 -3.6021 0.9061 26 1 0.8495 -5.0422 0.9016 27 1 0.8570 -5.0475 -0.8784 28 1 3.0723 -6.0389 -0.7583 29 1 1.5389 -9.1583 -1.3669 30 1 3.1368 -8.2496 -1.5202 31 1 1.1119 -9.1902 2.1880 32 1 1.1146 -10.2872 0.7711 33 1 3.2531 -11.2283 1.3644 34 1 2.5055 -10.9921 2.9769 35 1 4.9133 -9.8843 2.4812 36 1 3.6747 -8.9164 3.3384 37 1 4.6342 -8.7030 0.4863 38 1 4.0145 -7.4246 1.5692 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387081249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:48 Heat of formation + Delta-G solvation = -29.603277 kcal Electronic energy + Delta-G solvation = -14876.416265 eV Core-core repulsion = 12524.019415 eV Total energy + Delta-G solvation = -2352.396850 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30315 -37.46027 -35.91045 -34.31955 -31.79374 -29.57617 -27.53527 -26.13657 -24.49381 -22.79974 -22.09508 -21.39799 -19.46427 -18.92713 -16.85371 -16.63885 -16.25931 -15.90239 -15.62279 -15.32826 -14.92810 -14.35969 -13.96748 -13.67204 -13.50554 -13.23008 -12.98021 -12.63273 -12.41982 -12.00760 -11.94227 -11.92409 -11.82197 -11.77453 -11.68758 -11.42020 -11.37703 -10.75376 -10.55778 -10.48474 -9.17967 -8.71097 -6.41465 1.52030 1.60981 1.80548 2.56091 2.74720 3.05476 3.14076 3.65467 3.81684 3.87100 4.02962 4.11758 4.26627 4.29019 4.35543 4.53215 4.60850 4.63290 4.79014 4.82052 4.84656 4.90763 4.94791 5.00738 5.03333 5.11134 5.14760 5.25174 5.32538 5.39507 5.49094 5.50152 5.50805 5.95578 6.07252 6.16571 6.36990 6.56152 7.40884 8.69883 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056822 B = 0.004066 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.645664 B = 6883.984182 C = 7054.607803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.041 4.041 3 Si 1.120 2.880 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.621 4.621 8 H 0.051 0.949 9 C 0.009 3.991 10 C -0.086 4.086 11 C 0.076 3.924 12 N -0.657 5.657 13 C 0.014 3.986 14 H 0.101 0.899 15 C -0.180 4.180 16 C -0.117 4.117 17 C -0.090 4.090 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.086 4.086 21 H 0.255 0.745 22 H -0.012 1.012 23 H -0.011 1.011 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.026 0.974 28 H 0.344 0.656 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.392 -21.055 1.142 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.238 4.238 3 Si 0.940 3.060 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.659 4.659 8 H 0.069 0.931 9 C -0.029 4.029 10 C -0.124 4.124 11 C -0.053 4.053 12 N -0.286 5.286 13 C -0.096 4.096 14 H 0.119 0.881 15 C -0.218 4.218 16 C -0.119 4.119 17 C -0.128 4.128 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.124 4.124 21 H 0.064 0.936 22 H 0.006 0.994 23 H 0.007 0.993 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.163 0.837 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.291 -19.399 1.827 20.475 hybrid contribution -0.519 -1.476 -0.942 1.826 sum 5.772 -20.874 0.884 21.676 Atomic orbital electron populations 1.70918 1.07966 1.29816 1.48845 1.27528 0.96630 1.07018 0.92613 0.82916 0.74113 0.70861 0.78105 1.19253 1.20754 1.19378 1.22520 0.94751 0.93512 1.55140 0.93106 1.19143 0.95119 0.94538 0.94064 1.21263 0.97801 0.92600 1.00765 1.21840 0.93942 0.89894 0.99594 1.60125 1.18805 1.00250 1.49440 1.22517 0.96348 0.85438 1.05328 0.88076 1.23605 1.03511 1.02230 0.92487 1.22116 0.97514 0.97642 0.94593 1.21921 0.97341 0.95329 0.98176 1.22452 0.95209 0.97078 1.00626 1.22363 0.99703 0.96502 0.97531 1.21521 0.93979 0.99711 0.97201 0.93600 0.99363 0.99284 0.93038 0.93016 0.92128 0.95614 0.83660 0.87525 0.88400 0.91918 0.90820 0.90805 0.90632 0.90771 0.92284 0.91841 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.73 13.65 21.45 0.29 -59.44 16 2 C -0.04 -2.44 5.46 84.66 0.46 -1.98 16 3 Si 1.12 51.23 29.90 68.60 2.05 53.29 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.62 -36.82 9.11 25.60 0.23 -36.58 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.01 0.48 4.28 29.85 0.13 0.61 16 10 C -0.09 -3.71 5.41 30.60 0.17 -3.54 16 11 C 0.08 2.71 5.54 86.31 0.48 3.19 16 12 N -0.66 -19.42 6.04 -492.18 -2.97 -22.39 16 13 C 0.01 0.36 6.17 44.79 0.28 0.64 16 14 H 0.10 2.60 7.90 -2.39 -0.02 2.58 16 15 C -0.18 -3.59 9.93 30.48 0.30 -3.28 16 16 C -0.12 -2.50 2.46 -52.02 -0.13 -2.63 16 17 C -0.09 -1.63 6.58 31.57 0.21 -1.42 16 18 C -0.12 -1.79 6.91 31.93 0.22 -1.57 16 19 C -0.12 -2.19 6.84 31.73 0.22 -1.98 16 20 C -0.09 -1.86 6.35 31.23 0.20 -1.66 16 21 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 22 H -0.01 -0.68 8.00 -2.39 -0.02 -0.70 16 23 H -0.01 -0.63 8.01 -2.39 -0.02 -0.65 16 24 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.34 9.50 8.52 -89.70 -0.76 8.74 16 29 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.10 1.88 8.09 -2.39 -0.02 1.86 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 33 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.53 7.65 -2.39 -0.02 1.51 16 Total: -1.00 -65.59 306.76 2.47 -63.12 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.34 Total: 15.63 kcal Atomic # 6 Polarization: -52.97 SS G_CDS: 2.76 Total: -50.21 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -2.68 Total: -81.83 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.29 kcal Total: -65.59 2.47 -63.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387081249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.515 kcal (2) G-P(sol) polarization free energy of solvation -65.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds