Wall clock time and date at job start Mon Mar 30 2020 02:53:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86802 * 119.99563 * 2 1
4 4 H 1.48498 * 109.46972 * 269.99842 * 3 2 1
5 5 H 1.48494 * 109.47161 * 30.00291 * 3 2 1
6 6 H 1.48503 * 109.46914 * 150.00235 * 3 2 1
7 7 C 1.37877 * 120.00308 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99632 * 180.02562 * 7 2 1
9 9 C 1.50696 * 120.00155 * 0.02562 * 7 2 1
10 10 C 1.52999 * 109.47270 * 180.02562 * 9 7 2
11 11 N 1.46905 * 109.46897 * 179.97438 * 10 9 7
12 12 C 1.46906 * 110.99433 * 179.97438 * 11 10 9
13 13 H 1.08999 * 115.56925 * 9.30093 * 12 11 10
14 14 C 1.53039 * 117.49928 * 223.58144 * 12 11 10
15 15 C 1.52809 * 117.49634 * 155.00247 * 12 11 10
16 16 C 1.53153 * 117.75016 * 359.84515 * 15 12 11
17 17 C 1.53182 * 108.87929 * 160.38137 * 16 15 12
18 18 C 1.52936 * 109.45558 * 56.56696 * 17 16 15
19 19 C 1.52945 * 109.76694 * 297.05267 * 18 17 16
20 20 C 1.53038 * 109.52544 * 63.01884 * 19 18 17
21 21 H 0.96995 * 120.00521 * 0.02562 * 1 2 3
22 22 H 1.09001 * 109.47270 * 59.99654 * 9 7 2
23 23 H 1.09001 * 109.47014 * 300.00183 * 9 7 2
24 24 H 1.08996 * 109.46972 * 59.99819 * 10 9 7
25 25 H 1.08997 * 109.46775 * 299.99718 * 10 9 7
26 26 H 1.00901 * 110.99671 * 56.05236 * 11 10 9
27 27 H 1.09005 * 117.49881 * 145.05291 * 14 12 11
28 28 H 1.08999 * 117.50676 * 0.02562 * 14 12 11
29 29 H 1.08999 * 109.56813 * 40.55932 * 16 15 12
30 30 H 1.08996 * 109.66852 * 280.25905 * 16 15 12
31 31 H 1.08999 * 109.47233 * 296.57051 * 17 16 15
32 32 H 1.08999 * 109.47218 * 176.56309 * 17 16 15
33 33 H 1.09002 * 109.41290 * 57.12766 * 18 17 16
34 34 H 1.09001 * 109.41520 * 176.98225 * 18 17 16
35 35 H 1.08995 * 109.47629 * 182.93554 * 19 18 17
36 36 H 1.09003 * 109.47480 * 302.95541 * 19 18 17
37 37 H 1.08998 * 109.58739 * 183.57657 * 20 19 18
38 38 H 1.09000 * 109.59292 * 63.19108 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4465 2.6526 0.7001
6 1 3.5467 1.4403 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0001
9 6 1.2512 -2.4991 -0.0017
10 6 2.2455 -3.6620 -0.0015
11 7 1.5110 -4.9342 -0.0020
12 6 2.4357 -6.0758 -0.0024
13 1 3.4858 -5.8307 0.1567
14 6 2.1163 -7.2435 -0.9386
15 6 1.9251 -7.3975 0.5699
16 6 0.4905 -7.4361 1.1049
17 6 0.0226 -8.8935 1.1640
18 6 0.9920 -9.7052 2.0245
19 6 2.3784 -9.7088 1.3786
20 6 2.9224 -8.2794 1.3271
21 1 -0.4851 0.8400 -0.0004
22 1 0.6249 -2.5563 -0.8919
23 1 0.6242 -2.5575 0.8880
24 1 2.8715 -3.6046 0.8890
25 1 2.8728 -3.6038 -0.8909
26 1 0.8750 -4.9842 -0.7837
27 1 2.9565 -7.7666 -1.3955
28 1 1.2205 -7.1645 -1.5545
29 1 -0.1622 -6.8697 0.4406
30 1 0.4598 -7.0020 2.1042
31 1 -0.0032 -9.3080 0.1562
32 1 -0.9751 -8.9374 1.6007
33 1 1.0559 -9.2593 3.0170
34 1 0.6297 -10.7297 2.1102
35 1 3.0521 -10.3311 1.9676
36 1 2.3068 -10.1075 0.3666
37 1 3.8820 -8.2720 0.8102
38 1 3.0489 -7.8997 2.3410
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000387376303.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:53:21
Heat of formation + Delta-G solvation = -10.855110 kcal
Electronic energy + Delta-G solvation = -15187.757623 eV
Core-core repulsion = 12836.173755 eV
Total energy + Delta-G solvation = -2351.583868 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-39.40463 -35.93723 -33.84595 -32.19153 -30.83538 -28.68486 -26.94503 -24.01868
-22.70545 -21.78139 -20.59787 -20.35461 -18.35541 -16.32624 -15.57838 -15.09237
-14.71642 -14.37157 -14.17545 -13.81089 -13.30277 -13.04751 -12.66107 -12.15422
-12.06733 -11.92877 -11.77672 -11.35822 -11.02832 -10.97078 -10.93374 -10.70718
-10.56403 -10.20152 -10.02499 -9.73979 -9.64851 -9.19105 -9.09553 -8.33942
-7.59220 -5.98804 -4.01392 3.32814 3.38943 3.42436 3.97013 4.41522
4.56524 4.79262 4.82241 4.98328 5.10968 5.20899 5.35889 5.37239
5.41342 5.48913 5.58827 5.66841 5.81686 5.89311 5.93341 6.01549
6.06939 6.11184 6.22813 6.23713 6.36497 6.37170 6.45558 6.53189
6.63966 6.98708 7.52826 7.74096 7.84041 7.96573 8.09508 8.44539
9.05815 9.62361 11.12688
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.058585 B = 0.004570 C = 0.004436
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 477.823096 B = 6125.385108 C = 6310.521089
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.058 3.942
3 Si 0.893 3.107
4 H -0.281 1.281
5 H -0.286 1.286
6 H -0.274 1.274
7 C -0.521 4.521
8 H 0.054 0.946
9 C 0.025 3.975
10 C 0.067 3.933
11 N -0.657 5.657
12 C 0.039 3.961
13 H 0.102 0.898
14 C -0.203 4.203
15 C -0.114 4.114
16 C -0.068 4.068
17 C -0.119 4.119
18 C -0.118 4.118
19 C -0.114 4.114
20 C -0.080 4.080
21 H 0.260 0.740
22 H 0.013 0.987
23 H 0.025 0.975
24 H 0.059 0.941
25 H 0.017 0.983
26 H 0.337 0.663
27 H 0.087 0.913
28 H 0.091 0.909
29 H 0.067 0.933
30 H 0.066 0.934
31 H 0.057 0.943
32 H 0.057 0.943
33 H 0.060 0.940
34 H 0.055 0.945
35 H 0.056 0.944
36 H 0.059 0.941
37 H 0.058 0.942
38 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.150 -18.304 1.233 18.614
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.143 4.143
3 Si 0.721 3.279
4 H -0.207 1.207
5 H -0.212 1.212
6 H -0.199 1.199
7 C -0.560 4.560
8 H 0.072 0.928
9 C -0.013 4.013
10 C -0.061 4.061
11 N -0.286 5.286
12 C -0.073 4.073
13 H 0.119 0.881
14 C -0.242 4.242
15 C -0.115 4.115
16 C -0.106 4.106
17 C -0.156 4.156
18 C -0.155 4.155
19 C -0.152 4.152
20 C -0.118 4.118
21 H 0.070 0.930
22 H 0.032 0.968
23 H 0.044 0.956
24 H 0.077 0.923
25 H 0.035 0.965
26 H 0.156 0.844
27 H 0.105 0.895
28 H 0.109 0.891
29 H 0.086 0.914
30 H 0.085 0.915
31 H 0.076 0.924
32 H 0.076 0.924
33 H 0.079 0.921
34 H 0.073 0.927
35 H 0.075 0.925
36 H 0.078 0.922
37 H 0.077 0.923
38 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 2.904 -18.150 1.922 18.481
hybrid contribution 0.784 0.969 -1.002 1.600
sum 3.688 -17.181 0.920 17.596
Atomic orbital electron populations
1.69971 1.06041 1.26591 1.50676 1.25000 0.94835 0.99210 0.95290
0.86585 0.79849 0.83455 0.78052 1.20710 1.21183 1.19872 1.21172
0.92988 0.91005 1.50860 0.92756 1.19072 0.94043 0.90451 0.97704
1.22205 0.97009 0.88154 0.98689 1.60318 1.18424 1.01279 1.48545
1.22568 0.96141 0.86585 1.01987 0.88064 1.23567 1.02948 1.04739
0.92923 1.21700 0.96800 0.99010 0.93998 1.20907 0.93107 0.95000
1.01575 1.21566 0.98159 0.96171 0.99727 1.21483 0.95299 0.99447
0.99307 1.21462 0.96447 0.96574 1.00675 1.21091 0.96620 0.94043
1.00056 0.92992 0.96838 0.95630 0.92271 0.96512 0.84402 0.89500
0.89060 0.91410 0.91525 0.92405 0.92377 0.92092 0.92668 0.92491
0.92198 0.92290 0.91599
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16
2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16
4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16
5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16
6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16
7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16
8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16
9 C 0.02 0.65 5.23 -27.89 -0.15 0.51 16
10 C 0.07 1.44 5.48 -3.82 -0.02 1.42 16
11 N -0.66 -11.95 5.94 -106.80 -0.63 -12.59 16
12 C 0.04 0.59 6.02 -67.79 -0.41 0.18 16
13 H 0.10 1.54 7.90 -51.93 -0.41 1.13 16
14 C -0.20 -2.60 9.63 -26.79 -0.26 -2.85 16
15 C -0.11 -1.48 1.97 -154.53 -0.30 -1.78 16
16 C -0.07 -0.90 5.27 -26.56 -0.14 -1.04 16
17 C -0.12 -1.29 5.93 -26.67 -0.16 -1.44 16
18 C -0.12 -1.16 5.83 -26.79 -0.16 -1.31 16
19 C -0.11 -1.11 5.92 -26.74 -0.16 -1.27 16
20 C -0.08 -0.91 5.67 -26.63 -0.15 -1.06 16
21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16
23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16
24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16
25 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
26 H 0.34 5.97 8.52 -39.29 -0.33 5.63 16
27 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16
28 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16
29 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16
30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16
35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16
38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
LS Contribution 303.85 15.07 4.58 4.58
Total: -1.00 -29.50 303.85 -9.68 -39.17
By element:
Atomic # 1 Polarization: 7.82 SS G_CDS: -7.03 Total: 0.80 kcal
Atomic # 6 Polarization: -20.03 SS G_CDS: -2.31 Total: -22.34 kcal
Atomic # 7 Polarization: -39.12 SS G_CDS: 0.10 Total: -39.01 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal
Total LS contribution 4.58 Total: 4.58 kcal
Total: -29.50 -9.68 -39.17 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000387376303.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.318 kcal
(2) G-P(sol) polarization free energy of solvation -29.496 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.178 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.855 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds