Wall clock time and date at job start Mon Mar 30 2020 02:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99563 * 2 1 4 4 H 1.48498 * 109.46972 * 269.99842 * 3 2 1 5 5 H 1.48494 * 109.47161 * 30.00291 * 3 2 1 6 6 H 1.48503 * 109.46914 * 150.00235 * 3 2 1 7 7 C 1.37877 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00155 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47270 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.46897 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99433 * 179.97438 * 11 10 9 13 13 H 1.08999 * 115.56925 * 9.30093 * 12 11 10 14 14 C 1.53039 * 117.49928 * 223.58144 * 12 11 10 15 15 C 1.52809 * 117.49634 * 155.00247 * 12 11 10 16 16 C 1.53153 * 117.75016 * 359.84515 * 15 12 11 17 17 C 1.53182 * 108.87929 * 160.38137 * 16 15 12 18 18 C 1.52936 * 109.45558 * 56.56696 * 17 16 15 19 19 C 1.52945 * 109.76694 * 297.05267 * 18 17 16 20 20 C 1.53038 * 109.52544 * 63.01884 * 19 18 17 21 21 H 0.96995 * 120.00521 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47270 * 59.99654 * 9 7 2 23 23 H 1.09001 * 109.47014 * 300.00183 * 9 7 2 24 24 H 1.08996 * 109.46972 * 59.99819 * 10 9 7 25 25 H 1.08997 * 109.46775 * 299.99718 * 10 9 7 26 26 H 1.00901 * 110.99671 * 56.05236 * 11 10 9 27 27 H 1.09005 * 117.49881 * 145.05291 * 14 12 11 28 28 H 1.08999 * 117.50676 * 0.02562 * 14 12 11 29 29 H 1.08999 * 109.56813 * 40.55932 * 16 15 12 30 30 H 1.08996 * 109.66852 * 280.25905 * 16 15 12 31 31 H 1.08999 * 109.47233 * 296.57051 * 17 16 15 32 32 H 1.08999 * 109.47218 * 176.56309 * 17 16 15 33 33 H 1.09002 * 109.41290 * 57.12766 * 18 17 16 34 34 H 1.09001 * 109.41520 * 176.98225 * 18 17 16 35 35 H 1.08995 * 109.47629 * 182.93554 * 19 18 17 36 36 H 1.09003 * 109.47480 * 302.95541 * 19 18 17 37 37 H 1.08998 * 109.58739 * 183.57657 * 20 19 18 38 38 H 1.09000 * 109.59292 * 63.19108 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 7 1.5110 -4.9342 -0.0020 12 6 2.4357 -6.0758 -0.0024 13 1 3.4858 -5.8307 0.1567 14 6 2.1163 -7.2435 -0.9386 15 6 1.9251 -7.3975 0.5699 16 6 0.4905 -7.4361 1.1049 17 6 0.0226 -8.8935 1.1640 18 6 0.9920 -9.7052 2.0245 19 6 2.3784 -9.7088 1.3786 20 6 2.9224 -8.2794 1.3271 21 1 -0.4851 0.8400 -0.0004 22 1 0.6249 -2.5563 -0.8919 23 1 0.6242 -2.5575 0.8880 24 1 2.8715 -3.6046 0.8890 25 1 2.8728 -3.6038 -0.8909 26 1 0.8750 -4.9842 -0.7837 27 1 2.9565 -7.7666 -1.3955 28 1 1.2205 -7.1645 -1.5545 29 1 -0.1622 -6.8697 0.4406 30 1 0.4598 -7.0020 2.1042 31 1 -0.0032 -9.3080 0.1562 32 1 -0.9751 -8.9374 1.6007 33 1 1.0559 -9.2593 3.0170 34 1 0.6297 -10.7297 2.1102 35 1 3.0521 -10.3311 1.9676 36 1 2.3068 -10.1075 0.3666 37 1 3.8820 -8.2720 0.8102 38 1 3.0489 -7.8997 2.3410 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387376303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:21 Heat of formation + Delta-G solvation = -10.855110 kcal Electronic energy + Delta-G solvation = -15187.757623 eV Core-core repulsion = 12836.173755 eV Total energy + Delta-G solvation = -2351.583868 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40463 -35.93723 -33.84595 -32.19153 -30.83538 -28.68486 -26.94503 -24.01868 -22.70545 -21.78139 -20.59787 -20.35461 -18.35541 -16.32624 -15.57838 -15.09237 -14.71642 -14.37157 -14.17545 -13.81089 -13.30277 -13.04751 -12.66107 -12.15422 -12.06733 -11.92877 -11.77672 -11.35822 -11.02832 -10.97078 -10.93374 -10.70718 -10.56403 -10.20152 -10.02499 -9.73979 -9.64851 -9.19105 -9.09553 -8.33942 -7.59220 -5.98804 -4.01392 3.32814 3.38943 3.42436 3.97013 4.41522 4.56524 4.79262 4.82241 4.98328 5.10968 5.20899 5.35889 5.37239 5.41342 5.48913 5.58827 5.66841 5.81686 5.89311 5.93341 6.01549 6.06939 6.11184 6.22813 6.23713 6.36497 6.37170 6.45558 6.53189 6.63966 6.98708 7.52826 7.74096 7.84041 7.96573 8.09508 8.44539 9.05815 9.62361 11.12688 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.058585 B = 0.004570 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.823096 B = 6125.385108 C = 6310.521089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.657 5.657 12 C 0.039 3.961 13 H 0.102 0.898 14 C -0.203 4.203 15 C -0.114 4.114 16 C -0.068 4.068 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.080 4.080 21 H 0.260 0.740 22 H 0.013 0.987 23 H 0.025 0.975 24 H 0.059 0.941 25 H 0.017 0.983 26 H 0.337 0.663 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 -18.304 1.233 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.061 4.061 11 N -0.286 5.286 12 C -0.073 4.073 13 H 0.119 0.881 14 C -0.242 4.242 15 C -0.115 4.115 16 C -0.106 4.106 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.118 4.118 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.156 0.844 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.904 -18.150 1.922 18.481 hybrid contribution 0.784 0.969 -1.002 1.600 sum 3.688 -17.181 0.920 17.596 Atomic orbital electron populations 1.69971 1.06041 1.26591 1.50676 1.25000 0.94835 0.99210 0.95290 0.86585 0.79849 0.83455 0.78052 1.20710 1.21183 1.19872 1.21172 0.92988 0.91005 1.50860 0.92756 1.19072 0.94043 0.90451 0.97704 1.22205 0.97009 0.88154 0.98689 1.60318 1.18424 1.01279 1.48545 1.22568 0.96141 0.86585 1.01987 0.88064 1.23567 1.02948 1.04739 0.92923 1.21700 0.96800 0.99010 0.93998 1.20907 0.93107 0.95000 1.01575 1.21566 0.98159 0.96171 0.99727 1.21483 0.95299 0.99447 0.99307 1.21462 0.96447 0.96574 1.00675 1.21091 0.96620 0.94043 1.00056 0.92992 0.96838 0.95630 0.92271 0.96512 0.84402 0.89500 0.89060 0.91410 0.91525 0.92405 0.92377 0.92092 0.92668 0.92491 0.92198 0.92290 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.65 5.23 -27.89 -0.15 0.51 16 10 C 0.07 1.44 5.48 -3.82 -0.02 1.42 16 11 N -0.66 -11.95 5.94 -106.80 -0.63 -12.59 16 12 C 0.04 0.59 6.02 -67.79 -0.41 0.18 16 13 H 0.10 1.54 7.90 -51.93 -0.41 1.13 16 14 C -0.20 -2.60 9.63 -26.79 -0.26 -2.85 16 15 C -0.11 -1.48 1.97 -154.53 -0.30 -1.78 16 16 C -0.07 -0.90 5.27 -26.56 -0.14 -1.04 16 17 C -0.12 -1.29 5.93 -26.67 -0.16 -1.44 16 18 C -0.12 -1.16 5.83 -26.79 -0.16 -1.31 16 19 C -0.11 -1.11 5.92 -26.74 -0.16 -1.27 16 20 C -0.08 -0.91 5.67 -26.63 -0.15 -1.06 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.34 5.97 8.52 -39.29 -0.33 5.63 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16 29 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 303.85 15.07 4.58 4.58 Total: -1.00 -29.50 303.85 -9.68 -39.17 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.03 Total: 0.80 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -2.31 Total: -22.34 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.10 Total: -39.01 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.50 -9.68 -39.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387376303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.318 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds