Wall clock time and date at job start Mon Mar 30 2020 02:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99563 * 2 1 4 4 H 1.48498 * 109.46972 * 269.99842 * 3 2 1 5 5 H 1.48494 * 109.47161 * 30.00291 * 3 2 1 6 6 H 1.48503 * 109.46914 * 150.00235 * 3 2 1 7 7 C 1.37877 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00155 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47270 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.46897 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99433 * 179.97438 * 11 10 9 13 13 H 1.08999 * 115.56925 * 9.30093 * 12 11 10 14 14 C 1.53039 * 117.49928 * 223.58144 * 12 11 10 15 15 C 1.52809 * 117.49634 * 155.00247 * 12 11 10 16 16 C 1.53153 * 117.75016 * 359.84515 * 15 12 11 17 17 C 1.53182 * 108.87929 * 160.38137 * 16 15 12 18 18 C 1.52936 * 109.45558 * 56.56696 * 17 16 15 19 19 C 1.52945 * 109.76694 * 297.05267 * 18 17 16 20 20 C 1.53038 * 109.52544 * 63.01884 * 19 18 17 21 21 H 0.96995 * 120.00521 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47270 * 59.99654 * 9 7 2 23 23 H 1.09001 * 109.47014 * 300.00183 * 9 7 2 24 24 H 1.08996 * 109.46972 * 59.99819 * 10 9 7 25 25 H 1.08997 * 109.46775 * 299.99718 * 10 9 7 26 26 H 1.00901 * 110.99671 * 56.05236 * 11 10 9 27 27 H 1.09005 * 117.49881 * 145.05291 * 14 12 11 28 28 H 1.08999 * 117.50676 * 0.02562 * 14 12 11 29 29 H 1.08999 * 109.56813 * 40.55932 * 16 15 12 30 30 H 1.08996 * 109.66852 * 280.25905 * 16 15 12 31 31 H 1.08999 * 109.47233 * 296.57051 * 17 16 15 32 32 H 1.08999 * 109.47218 * 176.56309 * 17 16 15 33 33 H 1.09002 * 109.41290 * 57.12766 * 18 17 16 34 34 H 1.09001 * 109.41520 * 176.98225 * 18 17 16 35 35 H 1.08995 * 109.47629 * 182.93554 * 19 18 17 36 36 H 1.09003 * 109.47480 * 302.95541 * 19 18 17 37 37 H 1.08998 * 109.58739 * 183.57657 * 20 19 18 38 38 H 1.09000 * 109.59292 * 63.19108 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 7 1.5110 -4.9342 -0.0020 12 6 2.4357 -6.0758 -0.0024 13 1 3.4858 -5.8307 0.1567 14 6 2.1163 -7.2435 -0.9386 15 6 1.9251 -7.3975 0.5699 16 6 0.4905 -7.4361 1.1049 17 6 0.0226 -8.8935 1.1640 18 6 0.9920 -9.7052 2.0245 19 6 2.3784 -9.7088 1.3786 20 6 2.9224 -8.2794 1.3271 21 1 -0.4851 0.8400 -0.0004 22 1 0.6249 -2.5563 -0.8919 23 1 0.6242 -2.5575 0.8880 24 1 2.8715 -3.6046 0.8890 25 1 2.8728 -3.6038 -0.8909 26 1 0.8750 -4.9842 -0.7837 27 1 2.9565 -7.7666 -1.3955 28 1 1.2205 -7.1645 -1.5545 29 1 -0.1622 -6.8697 0.4406 30 1 0.4598 -7.0020 2.1042 31 1 -0.0032 -9.3080 0.1562 32 1 -0.9751 -8.9374 1.6007 33 1 1.0559 -9.2593 3.0170 34 1 0.6297 -10.7297 2.1102 35 1 3.0521 -10.3311 1.9676 36 1 2.3068 -10.1075 0.3666 37 1 3.8820 -8.2720 0.8102 38 1 3.0489 -7.8997 2.3410 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387376303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:21 Heat of formation + Delta-G solvation = -27.456625 kcal Electronic energy + Delta-G solvation = -15188.477518 eV Core-core repulsion = 12836.173755 eV Total energy + Delta-G solvation = -2352.303764 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46208 -37.24181 -35.54571 -33.99942 -31.75538 -30.51335 -28.03230 -26.00682 -23.65350 -22.81766 -22.41509 -21.49427 -19.35203 -18.50632 -16.83358 -16.41218 -16.29778 -16.01270 -15.21029 -14.89310 -14.56672 -14.31272 -14.26705 -13.63471 -13.30440 -13.18042 -13.00206 -12.85158 -12.69301 -12.48047 -12.32638 -11.89063 -11.88123 -11.61020 -11.46882 -11.31988 -10.95725 -10.85870 -10.57318 -10.44652 -8.99439 -8.21352 -6.33269 1.39887 1.41748 1.52977 2.39827 2.85428 3.12066 3.25943 3.80781 3.90879 3.96554 4.10290 4.28788 4.30727 4.48567 4.51239 4.58172 4.61455 4.68865 4.78230 4.83083 4.91590 5.02945 5.04587 5.07938 5.19560 5.22317 5.33875 5.37558 5.43211 5.44385 5.61689 5.62759 5.65660 5.78346 6.14450 6.29685 6.50799 6.83747 7.36200 8.90946 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.058585 B = 0.004570 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.823096 B = 6125.385108 C = 6310.521089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.088 3.912 11 N -0.662 5.662 12 C 0.010 3.990 13 H 0.102 0.898 14 C -0.183 4.183 15 C -0.105 4.105 16 C -0.070 4.070 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.110 4.110 20 C -0.081 4.081 21 H 0.264 0.736 22 H -0.009 1.009 23 H -0.007 1.007 24 H 0.056 0.944 25 H 0.020 0.980 26 H 0.337 0.663 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 -19.437 1.062 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.041 4.041 11 N -0.291 5.291 12 C -0.101 4.101 13 H 0.119 0.881 14 C -0.222 4.222 15 C -0.106 4.106 16 C -0.108 4.108 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.118 4.118 21 H 0.073 0.927 22 H 0.009 0.991 23 H 0.012 0.988 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.156 0.844 27 H 0.125 0.875 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.260 -19.311 1.751 19.853 hybrid contribution 0.318 1.281 -0.944 1.622 sum 4.578 -18.030 0.807 18.620 Atomic orbital electron populations 1.70108 1.07873 1.27860 1.51368 1.25987 0.95768 1.03422 0.94518 0.85400 0.78619 0.78183 0.78552 1.19635 1.20648 1.18714 1.21605 0.93543 0.92225 1.51061 0.92136 1.18916 0.94297 0.92342 0.94988 1.21791 0.95569 0.88121 0.98619 1.60236 1.18983 1.01026 1.48883 1.22637 0.95639 0.86384 1.05458 0.88051 1.23588 1.03470 1.02367 0.92764 1.21793 0.96970 0.97240 0.94597 1.20891 0.93217 0.96559 1.00121 1.21531 0.98745 0.94452 1.00433 1.21495 0.95179 1.00104 0.98729 1.21450 0.96496 0.95502 1.01299 1.21134 0.96541 0.94689 0.99459 0.92699 0.99054 0.98844 0.92558 0.96170 0.84415 0.87510 0.89031 0.93112 0.93222 0.91870 0.91911 0.92572 0.90933 0.90865 0.91683 0.91364 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.55 -31.83 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.76 5.23 29.85 0.16 1.91 16 10 C 0.09 3.84 5.48 86.30 0.47 4.31 16 11 N -0.66 -24.59 5.94 -491.82 -2.92 -27.51 16 12 C 0.01 0.28 6.02 44.86 0.27 0.55 16 13 H 0.10 3.01 7.90 -2.39 -0.02 3.00 16 14 C -0.18 -4.37 9.63 30.55 0.29 -4.07 16 15 C -0.10 -2.60 1.97 -52.19 -0.10 -2.70 16 16 C -0.07 -1.82 5.27 30.71 0.16 -1.66 16 17 C -0.11 -2.29 5.93 30.63 0.18 -2.11 16 18 C -0.12 -2.03 5.83 30.55 0.18 -1.85 16 19 C -0.11 -1.82 5.92 30.59 0.18 -1.64 16 20 C -0.08 -1.65 5.67 30.66 0.17 -1.47 16 21 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 22 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 23 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 24 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.34 12.27 8.52 -89.69 -0.76 11.51 16 27 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 29 H 0.05 1.46 7.76 -2.39 -0.02 1.45 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -63.66 303.85 2.29 -61.37 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.24 Total: 16.63 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 2.66 Total: -39.80 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -2.63 Total: -84.98 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.66 2.29 -61.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387376303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.915 kcal (2) G-P(sol) polarization free energy of solvation -63.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds