Wall clock time and date at job start Mon Mar 30 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00262 * 2 1 4 4 H 1.48500 * 109.47426 * 270.00023 * 3 2 1 5 5 H 1.48501 * 109.46949 * 30.00103 * 3 2 1 6 6 H 1.48508 * 109.47306 * 149.99913 * 3 2 1 7 7 C 1.37881 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99724 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00385 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47112 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47140 * 55.00317 * 10 9 7 12 12 C 1.53006 * 109.47164 * 175.00266 * 10 9 7 13 13 C 1.52997 * 109.47164 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47415 * 300.00027 * 13 12 10 15 15 H 1.08992 * 109.46974 * 180.02562 * 14 13 12 16 16 N 1.46896 * 109.46537 * 299.99923 * 14 13 12 17 17 C 1.46899 * 110.99907 * 204.99782 * 16 14 13 18 18 C 1.53006 * 117.50297 * 223.75356 * 17 16 14 19 19 C 1.53003 * 117.50323 * 155.09057 * 17 16 14 20 20 C 1.52996 * 109.46972 * 59.99860 * 14 13 12 21 21 C 1.52997 * 109.47165 * 300.00293 * 20 14 13 22 22 H 0.96992 * 119.99579 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46977 * 59.99900 * 9 7 2 24 24 H 1.08994 * 109.47189 * 299.99738 * 9 7 2 25 25 H 1.09001 * 109.46998 * 299.99705 * 12 10 9 26 26 H 1.09000 * 109.47050 * 59.99996 * 12 10 9 27 27 H 1.09000 * 109.47140 * 60.00051 * 13 12 10 28 28 H 1.09001 * 109.47230 * 179.97438 * 13 12 10 29 29 H 1.00896 * 111.00508 * 328.95207 * 16 14 13 30 30 H 1.09008 * 115.55151 * 9.41956 * 17 16 14 31 31 H 1.09002 * 117.49434 * 359.97438 * 18 17 16 32 32 H 1.08996 * 117.50113 * 145.02119 * 18 17 16 33 33 H 1.09001 * 117.49807 * 214.98216 * 19 17 16 34 34 H 1.09000 * 117.49325 * 359.97382 * 19 17 16 35 35 H 1.09000 * 109.47054 * 60.00300 * 20 14 13 36 36 H 1.09001 * 109.46997 * 180.02562 * 20 14 13 37 37 H 1.09000 * 109.47140 * 299.99954 * 21 20 14 38 38 H 1.09002 * 109.47045 * 180.02562 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5865 -3.1758 -0.8425 12 6 5.5463 -2.6386 -0.1272 13 6 6.0563 -4.0810 -0.1265 14 6 5.6520 -4.7643 1.1815 15 1 6.0157 -5.7917 1.1821 16 7 6.2382 -4.0371 2.3152 17 6 6.3966 -4.9177 3.4802 18 6 5.9914 -4.3614 4.8468 19 6 7.4716 -4.5482 4.5043 20 6 4.1272 -4.7624 1.3077 21 6 3.6173 -3.3199 1.3069 22 1 -0.4849 0.8400 -0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6802 -0.8911 25 1 5.8343 -2.1515 -1.0589 26 1 5.9812 -2.0994 0.7143 27 1 5.6214 -4.6206 -0.9678 28 1 7.1425 -4.0825 -0.2169 29 1 7.1181 -3.6155 2.0584 30 1 6.2202 -5.9775 3.2960 31 1 5.6076 -3.3417 4.8813 32 1 5.5488 -5.0551 5.5615 33 1 8.0022 -5.3648 4.9939 34 1 8.0616 -3.6518 4.3133 35 1 3.6923 -5.3019 0.4664 36 1 3.8392 -5.2487 2.2397 37 1 4.0522 -2.7803 2.1482 38 1 2.5310 -3.3185 1.3973 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389070759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:55 Heat of formation + Delta-G solvation = -0.541480 kcal Electronic energy + Delta-G solvation = -15760.608030 eV Core-core repulsion = 13409.471395 eV Total energy + Delta-G solvation = -2351.136635 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.02006 -36.92308 -33.75776 -32.00060 -30.24547 -29.57279 -26.49510 -22.68759 -22.38489 -22.07228 -21.09536 -19.84293 -18.61211 -16.61231 -15.84836 -15.51843 -15.08276 -14.18287 -14.02230 -13.48616 -13.19679 -12.71942 -12.50262 -12.05773 -11.95662 -11.59217 -11.52956 -11.46414 -11.09058 -10.95248 -10.56589 -10.45294 -10.33703 -10.18253 -9.82998 -9.55505 -9.39416 -9.06282 -8.85043 -8.42556 -8.11744 -5.93961 -3.89667 3.37539 3.44729 3.50123 3.82707 4.07164 4.54844 4.90963 4.94619 5.08531 5.12849 5.26675 5.36096 5.41088 5.56721 5.61073 5.77412 5.88701 5.93160 5.97069 6.02919 6.12373 6.18373 6.22644 6.30824 6.45403 6.62721 6.82333 6.84894 7.09117 7.15362 7.28059 7.33303 7.43516 7.50255 7.67060 7.93340 8.67178 9.12554 9.70009 11.19748 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032990 B = 0.006718 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.540826 B = 4167.064395 C = 4348.231387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.063 3.937 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.509 4.509 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.068 4.068 11 H 0.054 0.946 12 C -0.111 4.111 13 C -0.119 4.119 14 C 0.094 3.906 15 H 0.035 0.965 16 N -0.645 5.645 17 C 0.022 3.978 18 C -0.169 4.169 19 C -0.199 4.199 20 C -0.107 4.107 21 C -0.093 4.093 22 H 0.261 0.739 23 H 0.015 0.985 24 H 0.006 0.994 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.340 0.660 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.771 -9.824 5.050 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.137 4.137 3 Si 0.705 3.295 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.547 4.547 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.087 4.087 11 H 0.073 0.927 12 C -0.149 4.149 13 C -0.157 4.157 14 C -0.015 4.015 15 H 0.053 0.947 16 N -0.277 5.277 17 C -0.088 4.088 18 C -0.208 4.208 19 C -0.238 4.238 20 C -0.145 4.145 21 C -0.131 4.131 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.160 0.840 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.018 -9.448 5.234 17.697 hybrid contribution 1.077 0.398 -0.266 1.179 sum 15.095 -9.051 4.968 18.288 Atomic orbital electron populations 1.69922 1.06269 1.26619 1.51976 1.25033 0.94676 0.99054 0.94914 0.86810 0.80462 0.83870 0.78321 1.20527 1.21607 1.19001 1.21194 0.89668 0.94225 1.49653 0.90966 1.19611 0.96935 0.92243 0.95888 1.20958 0.92202 0.98346 0.97184 0.92745 1.21583 0.97866 0.94465 1.00937 1.21736 0.99276 0.98139 0.96586 1.21562 0.96312 0.94180 0.89477 0.94721 1.60194 1.30220 1.32242 1.05009 1.22428 1.02947 0.95314 0.88149 1.23123 0.96217 1.03218 0.98213 1.23248 0.92535 1.03260 1.04731 1.21572 0.93286 0.99247 1.00368 1.21331 1.00706 0.92980 0.98078 0.92969 0.96646 0.97522 0.93155 0.91796 0.91559 0.93098 0.84027 0.88738 0.88112 0.89221 0.89219 0.88770 0.92599 0.92987 0.91572 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.51 -14.71 8.96 -34.44 -0.31 -15.02 16 8 H 0.07 2.23 7.30 -52.48 -0.38 1.85 16 9 C -0.01 -0.23 3.52 -27.89 -0.10 -0.33 16 10 C -0.07 -1.37 2.14 -90.62 -0.19 -1.57 16 11 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 12 C -0.11 -1.82 5.04 -26.73 -0.13 -1.95 16 13 C -0.12 -1.59 5.30 -26.73 -0.14 -1.73 16 14 C 0.09 1.25 2.78 -67.72 -0.19 1.06 16 15 H 0.03 0.42 7.57 -51.93 -0.39 0.03 16 16 N -0.65 -8.28 5.07 -99.74 -0.51 -8.79 16 17 C 0.02 0.25 6.03 -67.71 -0.41 -0.15 16 18 C -0.17 -1.91 10.46 -26.69 -0.28 -2.19 16 19 C -0.20 -1.96 10.34 -26.69 -0.28 -2.23 16 20 C -0.11 -1.65 5.54 -26.73 -0.15 -1.80 16 21 C -0.09 -1.80 4.85 -26.73 -0.13 -1.93 16 22 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 23 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 24 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.06 7.48 -51.93 -0.39 0.67 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.34 4.01 8.14 -39.29 -0.32 3.69 16 30 H 0.09 1.04 7.60 -51.92 -0.39 0.64 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.78 8.07 -51.93 -0.42 0.37 16 37 H 0.07 1.32 7.60 -51.93 -0.39 0.93 16 38 H 0.06 1.43 6.95 -51.93 -0.36 1.07 16 LS Contribution 294.74 15.07 4.44 4.44 Total: -1.00 -30.35 294.74 -9.16 -39.51 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.79 Total: 1.00 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -2.40 Total: -26.06 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.27 Total: -36.59 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.35 -9.16 -39.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389070759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.965 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds